Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g847 ATGGAGTTGAAGAAGGAGAAGATAGTGAGGTTTTATTCTGATGAAAATCAACATCAAGAATGGGGGAAAAATGATCCATTACTCCTAGGAAAGTCATCTTCTATAGACAAGGTTTCATCTTCCTTCTTGAAACCACATAATGCGGTCAGGAGCAGAAATAAGATACCTGAAACCCTTAAATTTGGGAGGTCCAAGGTGTTTCCAGAAGACCATGAGCCATGGCGCAAGCAAATACTTGACCCAGGTAGTGAGCTAGTCTTACAATGGAGTCGAGTCTTCATTGTCTCGTGCTTGGTGGCACTTTTTGTTGATCCATTGTATTTTTATTTGCCTGCTGTGGGAGGGAATGAGGGCTCTTGGTGTATCAAGACAGACTTGAATTTGCGAATTGTGGTTACATGTTTTCGGACTATTGCCGATTTTTTCTATCTGTTGCACATGATTATAAAGTTCAGGACAGCTTATGTTGCCCCAAGCTCTCGGGTGTTTGGGAGGGGTGAACTTGTGATGGATCCCAAGAAAATCGCCCAGAGGTATATTAGGTCTGATTTCTTCATTGATTTGGTTGCAACATTGCCTCTCCCTCAGATTGTCATCTGGTTCATTATACCAGCTACGAGAAGCCCACAAACTGATCATAACAACAATGCCCTTGCGCTGATTGTTCTGCTCCAATATGTTCCCAGATTATATCTGATTTTTCCATTAAGTTCTCAAATTATTAAAGCAACTGGAGTGGTCACCAAGACTGCTTGGGCAGGGGCTGCATATAATCTGCTATTATACATGTTGGCAAGCCATGTATTAGGGGCAGCATGGTATTTGCTGTCAATTGACCGGTATATGGCATGCTGGAAATCAGTCTGCAGAAAGGAAACTGGGCCTACAAAATGTTTTCTTAATTATTTAGATTGTGATGCTTTCAACCATGATAATCGCAAATCTTGGGCAAATAGTACAAATGTATTTAAGAGCTGTTATCCTGAAAATGATATCACTTTTAAGTATGGCATATTTGAAAATGCAGTGACAAAGAGTGTTGTCTCCTCGAACTTCCTAGAGAAGTACTTCTATTGTTTGTGGTGGGGCTTACAAAACCTAAGTTCATATGGGCAGAACTTGTCAACAAGCACATTTATCGGGGAGACATCATTCGCCATTCTCATTGCCATTTTGGGTCTCGTTTTATTTGCCCACCTGATTGGGAATATGCAGACATACCTGCAATCTATCACTGTGCGGCTTGAGGAATGGAGACTCAAGCGAAGAGACACTGAGGAATGGATGAGGCATCGCCAACTCCCTGAAGATTTGAGACAACTTGTTCGGCGTTTTGTTCAATATAAGTGGGTTGCAACTCGAGGAGTAGATGAAGAAGCTATTCTTCGTGGCTTACCTGCGGATCTTCGTCGTGACATTCAACGCCACCTATGCTTGGACCTTGTTCGACGTGTTCCATTCTTCTCTCAGATGGATGATCAGCTACTTGATGCAATCTGTGAGCGTCTAACATCATCTTTAAGCACTGAAGGCACCTATATCGTCCGAGAGGGTGATCCAGTGACAGAGATGCTCTTTATAATTAGAGGAAGGCTGGAGAGTTCTACTACAAATGGAGGCCGTACGGGTTTCTTTAATTCAATTACATTGAGACCTGGAGATTTTTGCGGGGAAGAGCTGCTTGAATGGGCTTTGCTTCGAAAATCTACCCTCAACTTACCTTCTTCTACTAGAACAGTGAGAACCCTCGTTGAAGTGGAAGCCTTTGCACTGCGAGCTGAAGATCTCAAGTTTGTTGCCAACCAATTTAGACGACTGCACAGCAAGAAGCTGCAGCACACTTTCCGGTTCTATTCCCACCATTGGAGGACATGGGCAGCCTGCTTCATACAGGCTGCTTGGCGTAGGTACAAGAGGAGGCTGATGGCTAGAGATCTCACCACTGAACAAGAGAAAGAGGATCATGCCAGTTCAAATCTTTCTCAACCTAAAGTGAACCTTGGGGTGACAATGTTGGCTTCCAGGTTTGCTGCAAACACAAGGAGAGGGGCTCAGAAGATCAAAGGTGTTGGTATGTCTAAGTTACAGAAGCCTGAAGAACCTGACTTCACTGAGCCTGATGATGATTAG 2130 43.52 MELKKEKIVRFYSDENQHQEWGKNDPLLLGKSSSIDKVSSSFLKPHNAVRSRNKIPETLKFGRSKVFPEDHEPWRKQILDPGSELVLQWSRVFIVSCLVALFVDPLYFYLPAVGGNEGSWCIKTDLNLRIVVTCFRTIADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKKIAQRYIRSDFFIDLVATLPLPQIVIWFIIPATRSPQTDHNNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSIDRYMACWKSVCRKETGPTKCFLNYLDCDAFNHDNRKSWANSTNVFKSCYPENDITFKYGIFENAVTKSVVSSNFLEKYFYCLWWGLQNLSSYGQNLSTSTFIGETSFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPEDLRQLVRRFVQYKWVATRGVDEEAILRGLPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLTSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLEWALLRKSTLNLPSSTRTVRTLVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKRRLMARDLTTEQEKEDHASSNLSQPKVNLGVTMLASRFAANTRRGAQKIKGVGMSKLQKPEEPDFTEPDDD* 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14858550 14928989 + Vvi11g847 Vvi11g847 772288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g847 709 Pfam Cyclic nucleotide-binding domain 510 598 IPR000595 -
Vvi11g847 709 ProSiteProfiles cAMP/cGMP binding motif profile. 487 571 IPR000595 -
Vvi11g847 709 SUPERFAMILY cAMP-binding domain-like 417 609 IPR018490 -
Vvi11g847 709 MobiDBLite consensus disorder prediction 683 709 - -
Vvi11g847 709 Gene3D Helix hairpin bin 415 478 - -
Vvi11g847 709 CDD CAP_ED 487 618 IPR000595 -
Vvi11g847 709 Gene3D Jelly Rolls 485 605 IPR014710 -
Vvi11g847 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 46 706 - -
Vvi11g847 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 46 706 - -
Vvi11g847 709 PRINTS EAG/ELK/ERG potassium channel family signature 147 156 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g847 709 PRINTS EAG/ELK/ERG potassium channel family signature 264 274 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g847 709 PRINTS EAG/ELK/ERG potassium channel family signature 382 393 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g847 709 PRINTS EAG/ELK/ERG potassium channel family signature 400 409 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g847 709 PRINTS EAG/ELK/ERG potassium channel family signature 450 457 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g847 709 SUPERFAMILY Voltage-gated potassium channels 85 409 - -
Vvi11g847 709 Pfam Ion transport protein 89 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi11g847 709 Gene3D - 115 413 - -
Vvi11g847 709 SMART cnmp_10 487 618 IPR000595 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g847 K05391 - vvi:100250129 1400.19