Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g848 ATGATGATAACGGTGAGAGAAGCTTCTTCCTCTGCCCTCTGCTTCAACCTCAACCTCTCGAGGTCCTCTCATCCCGCTTCCACTGCCTCTCCAAGACTACGAAACTCCGTCTCAAGAGCCAGCTTTGCTGTCCACACAAAACCCAACAGCACGCCGAATTCATGGAACCTTGCTCTCTTTTGCAACAGGACATTCTGTGGAAAAAAAATATTGAGACCAACCATGATCATATATATTCCCCTCGATGTTTCTCCCAACATGATCAACATGGATTCATCATTCTGCAAAGGCCCAGTTTTTGACCCATTGGGCATCGATTCAGATAAATCTTTGGGTCTCAATGCTACCTGGGAGAGTGCCCTAGGTTTACTGTCACAAACATTTGGGAGTACCTCAAGTACAAAGAAGGATAAATCAGCTTCAGGTCAAGGAGTGGCAGCTGCAATTGAGGATAGTTCCATTGACTTTGGGGACTTCTTCAAAGGGCCATTACCAGGAAAATTTCTAAAGCTTTTGGGGTTATTGGCCTTATCCCGCCTTGGAGTCTATGTACCTCTTGGTGGTGTAAACAGGGAGGCCTTTGTTGGCAATTTAGATCAGAACAGTTTGTTGACCACTTTAGATTCATTTTCTGGAGGCGGCATTGGTCGACTTGGGATATGCTCCCTTGGCATTGTTCCCTTTATCAATGCACAGATTGTATTTCAGCTTCTCACTCAAATTTATCCCAAGTTGCAAGACCTTCAGAAAAGAGAAGGTGAAACAGGAAGAAAAAAAGTTCTTCAGTATACTCGCTATGCTTCAGTAGGTTTTGCTCTAGTGCAGGCAATTGGGCAAGTACTTTTTCTCCGGCCCTATGTCAATGACTTTAGTACACAGTGGGTTCTATCTTCTGTTACTTTATTGACTCTTGGATCAGTACTTACTACATATATTGGGGAAAGGATCTCTGACCTAAAACTTGGAAATGGTACATCCCTTCTAATCTTCACAAGCATCATCTCCTACTTGCCAGCTTCTTTTGGTAGGACGGTTGCACAGGCATTTCAGGATGGTAACTACATTGGACTCGTCATCATCATAATCTCCTTCTTCCTCTTAGTCCTTGGTATTGTGTATGTTCAGGAAGCAGAGAGGAAAATTCCACTTAATTATGCATCAAGATATACCAACAGAACTGGAGGCCTTCAAAAATCTGCTTACCTCCCTTTCAAGGTGAATAGTTCTGGGGTAATGCCGATCATATTTTCTACATCATCATTGGCTCTTCCTGGTACTGTGTCACGCTTTACTGGATTAGCTGCACTAAAGAAGGCTGCATTGGCTTTAAATCCTGGGGGTTCTCTTTATCTCCCAACCAACATACTTCTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAATTGGACCCTGATGATGTGAGTGAACAGTTGAAACGTCAAGGTGCATCAATCCCACTTGTGCGACCCGGTAAAAGTACAGCTGCATTTATTAAAATGGTACTGAGTCGGATATCAGTTCTTGGATCTGGGTTTTTGGCAATACTGGCTGCTGGTCCCTCCTTGGTTGAACAAACCACGCACCTGACAGCATTTCGGGGGTTTGCAGGCACGTCTGTTCTCATCCTTGTTGGTTGTGCTACAGACACAGCAAGGAAAGTCCAAGCAGAGATAATTTCCCAGAAATATAAGAACATAGAATTTTATGACATTGACAGGTTAGGCCGATAA 1734 43.48 MMITVREASSSALCFNLNLSRSSHPASTASPRLRNSVSRASFAVHTKPNSTPNSWNLALFCNRTFCGKKILRPTMIIYIPLDVSPNMINMDSSFCKGPVFDPLGIDSDKSLGLNATWESALGLLSQTFGSTSSTKKDKSASGQGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGLLALSRLGVYVPLGGVNREAFVGNLDQNSLLTTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLTQIYPKLQDLQKREGETGRKKVLQYTRYASVGFALVQAIGQVLFLRPYVNDFSTQWVLSSVTLLTLGSVLTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAQAFQDGNYIGLVIIIISFFLLVLGIVYVQEAERKIPLNYASRYTNRTGGLQKSAYLPFKVNSSGVMPIIFSTSSLALPGTVSRFTGLAALKKAALALNPGGSLYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFIKMVLSRISVLGSGFLAILAAGPSLVEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRLGR* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14929178 14965625 - Vvi11g848 Vvi11g848 772289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g848 577 Hamap Protein translocase subunit SecY [secY]. 156 568 IPR026593 -
Vvi11g848 577 Gene3D SecY subunit domain 159 564 IPR023201 -
Vvi11g848 577 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 85 573 IPR002208 GO:0015031|GO:0016020
Vvi11g848 577 SUPERFAMILY Preprotein translocase SecY subunit 160 558 IPR023201 -
Vvi11g848 577 ProSitePatterns Protein secY signature 1. 219 238 IPR030659 -
Vvi11g848 577 PRINTS Preprotein translocase SecY subunit signature 168 186 - -
Vvi11g848 577 PRINTS Preprotein translocase SecY subunit signature 218 238 - -
Vvi11g848 577 PRINTS Preprotein translocase SecY subunit signature 260 283 - -
Vvi11g848 577 PRINTS Preprotein translocase SecY subunit signature 292 317 - -
Vvi11g848 577 PRINTS Preprotein translocase SecY subunit signature 318 341 - -
Vvi11g848 577 PRINTS Preprotein translocase SecY subunit signature 409 428 - -
Vvi11g848 577 PRINTS Preprotein translocase SecY subunit signature 448 470 - -
Vvi11g848 577 PRINTS Preprotein translocase SecY subunit signature 503 521 - -
Vvi11g848 577 PRINTS Preprotein translocase SecY subunit signature 537 555 - -
Vvi11g848 577 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 85 573 - -
Vvi11g848 577 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 167 564 IPR002208 GO:0015031|GO:0016020
Vvi11g848 577 Pfam SecY 220 551 IPR002208 GO:0015031|GO:0016020
Vvi11g848 577 ProSitePatterns Protein secY signature 2. 311 328 IPR030659 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g848 K10956 - vvi:100248517 971.844