Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g848 | ATGATGATAACGGTGAGAGAAGCTTCTTCCTCTGCCCTCTGCTTCAACCTCAACCTCTCGAGGTCCTCTCATCCCGCTTCCACTGCCTCTCCAAGACTACGAAACTCCGTCTCAAGAGCCAGCTTTGCTGTCCACACAAAACCCAACAGCACGCCGAATTCATGGAACCTTGCTCTCTTTTGCAACAGGACATTCTGTGGAAAAAAAATATTGAGACCAACCATGATCATATATATTCCCCTCGATGTTTCTCCCAACATGATCAACATGGATTCATCATTCTGCAAAGGCCCAGTTTTTGACCCATTGGGCATCGATTCAGATAAATCTTTGGGTCTCAATGCTACCTGGGAGAGTGCCCTAGGTTTACTGTCACAAACATTTGGGAGTACCTCAAGTACAAAGAAGGATAAATCAGCTTCAGGTCAAGGAGTGGCAGCTGCAATTGAGGATAGTTCCATTGACTTTGGGGACTTCTTCAAAGGGCCATTACCAGGAAAATTTCTAAAGCTTTTGGGGTTATTGGCCTTATCCCGCCTTGGAGTCTATGTACCTCTTGGTGGTGTAAACAGGGAGGCCTTTGTTGGCAATTTAGATCAGAACAGTTTGTTGACCACTTTAGATTCATTTTCTGGAGGCGGCATTGGTCGACTTGGGATATGCTCCCTTGGCATTGTTCCCTTTATCAATGCACAGATTGTATTTCAGCTTCTCACTCAAATTTATCCCAAGTTGCAAGACCTTCAGAAAAGAGAAGGTGAAACAGGAAGAAAAAAAGTTCTTCAGTATACTCGCTATGCTTCAGTAGGTTTTGCTCTAGTGCAGGCAATTGGGCAAGTACTTTTTCTCCGGCCCTATGTCAATGACTTTAGTACACAGTGGGTTCTATCTTCTGTTACTTTATTGACTCTTGGATCAGTACTTACTACATATATTGGGGAAAGGATCTCTGACCTAAAACTTGGAAATGGTACATCCCTTCTAATCTTCACAAGCATCATCTCCTACTTGCCAGCTTCTTTTGGTAGGACGGTTGCACAGGCATTTCAGGATGGTAACTACATTGGACTCGTCATCATCATAATCTCCTTCTTCCTCTTAGTCCTTGGTATTGTGTATGTTCAGGAAGCAGAGAGGAAAATTCCACTTAATTATGCATCAAGATATACCAACAGAACTGGAGGCCTTCAAAAATCTGCTTACCTCCCTTTCAAGGTGAATAGTTCTGGGGTAATGCCGATCATATTTTCTACATCATCATTGGCTCTTCCTGGTACTGTGTCACGCTTTACTGGATTAGCTGCACTAAAGAAGGCTGCATTGGCTTTAAATCCTGGGGGTTCTCTTTATCTCCCAACCAACATACTTCTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAATTGGACCCTGATGATGTGAGTGAACAGTTGAAACGTCAAGGTGCATCAATCCCACTTGTGCGACCCGGTAAAAGTACAGCTGCATTTATTAAAATGGTACTGAGTCGGATATCAGTTCTTGGATCTGGGTTTTTGGCAATACTGGCTGCTGGTCCCTCCTTGGTTGAACAAACCACGCACCTGACAGCATTTCGGGGGTTTGCAGGCACGTCTGTTCTCATCCTTGTTGGTTGTGCTACAGACACAGCAAGGAAAGTCCAAGCAGAGATAATTTCCCAGAAATATAAGAACATAGAATTTTATGACATTGACAGGTTAGGCCGATAA | 1734 | 43.48 | MMITVREASSSALCFNLNLSRSSHPASTASPRLRNSVSRASFAVHTKPNSTPNSWNLALFCNRTFCGKKILRPTMIIYIPLDVSPNMINMDSSFCKGPVFDPLGIDSDKSLGLNATWESALGLLSQTFGSTSSTKKDKSASGQGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGLLALSRLGVYVPLGGVNREAFVGNLDQNSLLTTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLTQIYPKLQDLQKREGETGRKKVLQYTRYASVGFALVQAIGQVLFLRPYVNDFSTQWVLSSVTLLTLGSVLTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAQAFQDGNYIGLVIIIISFFLLVLGIVYVQEAERKIPLNYASRYTNRTGGLQKSAYLPFKVNSSGVMPIIFSTSSLALPGTVSRFTGLAALKKAALALNPGGSLYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFIKMVLSRISVLGSGFLAILAAGPSLVEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRLGR* | 578 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14929178 | 14965625 | - | Vvi11g848 | Vvi11g848 | 772289 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g848 | 577 | Hamap | Protein translocase subunit SecY [secY]. | 156 | 568 | IPR026593 | - | |
Vvi11g848 | 577 | Gene3D | SecY subunit domain | 159 | 564 | IPR023201 | - | |
Vvi11g848 | 577 | PANTHER | SECY/SEC61-ALPHA FAMILY MEMBER | 85 | 573 | IPR002208 | GO:0015031|GO:0016020 | |
Vvi11g848 | 577 | SUPERFAMILY | Preprotein translocase SecY subunit | 160 | 558 | IPR023201 | - | |
Vvi11g848 | 577 | ProSitePatterns | Protein secY signature 1. | 219 | 238 | IPR030659 | - | |
Vvi11g848 | 577 | PRINTS | Preprotein translocase SecY subunit signature | 168 | 186 | - | - | |
Vvi11g848 | 577 | PRINTS | Preprotein translocase SecY subunit signature | 218 | 238 | - | - | |
Vvi11g848 | 577 | PRINTS | Preprotein translocase SecY subunit signature | 260 | 283 | - | - | |
Vvi11g848 | 577 | PRINTS | Preprotein translocase SecY subunit signature | 292 | 317 | - | - | |
Vvi11g848 | 577 | PRINTS | Preprotein translocase SecY subunit signature | 318 | 341 | - | - | |
Vvi11g848 | 577 | PRINTS | Preprotein translocase SecY subunit signature | 409 | 428 | - | - | |
Vvi11g848 | 577 | PRINTS | Preprotein translocase SecY subunit signature | 448 | 470 | - | - | |
Vvi11g848 | 577 | PRINTS | Preprotein translocase SecY subunit signature | 503 | 521 | - | - | |
Vvi11g848 | 577 | PRINTS | Preprotein translocase SecY subunit signature | 537 | 555 | - | - | |
Vvi11g848 | 577 | PANTHER | PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC | 85 | 573 | - | - | |
Vvi11g848 | 577 | TIGRFAM | 3a0501s007: preprotein translocase, SecY subunit | 167 | 564 | IPR002208 | GO:0015031|GO:0016020 | |
Vvi11g848 | 577 | Pfam | SecY | 220 | 551 | IPR002208 | GO:0015031|GO:0016020 | |
Vvi11g848 | 577 | ProSitePatterns | Protein secY signature 2. | 311 | 328 | IPR030659 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g848 | K10956 | - | vvi:100248517 | 971.844 |