Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g880 ATGATGATCTCTGCTAGTTTCGTTGGCAAGAGACTTCATCGTCTTTGTACTTGTTTATCTTTCAAACTAGAATGTCTTGGCCGATCAATCTGGTTTCTAGTCTCATCCTTTTACAGCTTGGTAGTTCTTCGGGTCAACCCTTTTTGGATTCAGCTTTGTTATTTCCCATGTCTTTCCTTTCAGGGATTTTTGGTCCTCAAGGCTTTGAAGCCCAGGACTTATTCTTTTAGGCCTAGGAACTTGGATTTGTTCTTCACCTCAGTGTCGGCAGCCACTGTTTCTAGCATGTCCACAGTGGAAATGGAGGTTTTTTCCAACAACCAGCTTCTGATTTTGACGCTTCTCATGTTTGTAGGGGGAGAGGTTTTCACTTCGATGGTAGAACTCCACTTGCGAAGGTCTAAACTTGAGAAGCCATGGATAGCAGAGAACAAAATCGATTCCGTTACTAGCATTAATGGCAGTGCTCCTCTGAAGCAGGTTCATAGACAAATTGAGGGCCAAACTGAGTCATTGTCTACTAGTGAGTCTCTCAAATACCGTTCAATCAAATTTTTAGGGTTTGTGGTGATGGGGTACCTCGTAGTAGTTCATGTCGTTGGAGTCGCACTAGTGTCAGCTTACGTAGCCCTTGTGTCAAGTGCCAGAGATGTACTAAAGCAAAAGGGCCTTAAGCTCTTCACCTTTTCACTCTTCACAACAGTTTCTACTTTTGCAAGCTGCGGTTTTGTCCCAACAAATGAAAACATGATAGTGTTCAGCAGCAACTCTGGCCTGCTTCTTATCATCATTCCTCAGGTCCTTCTAGGGAACACCTTGTTTCCATCCTGCCTGCGTTTCTCCATATGGACTCTGGGGAAGTTTTTCAACAAAGCCGAGTCCAATTACCTACTGATGAACGCAAGGGAGATTGGATTTCTGTACTTGCTTCCTAGTCTCCATTCCACTCTTTTGGTTCCTACTGTTCTGGGCTTCATCCTAATACAGTTCACTTTGCTTTGCTCCATGGACTGGAATTCAGAAGGGTTGAATGGCCTGAATTCTTATCAGAAAATCATCGGTGCCCTGTTCCAGAGCGTGAACTCAAGGCATACAGGCGAAACAATTGTGGATATCTCAATTCTCTCACCTGCCATCTTGGTGTTATTCGTCGTAATGATGTACCTTCCTCCTTATACTTCTTTCCTACCCATAGAAGATTATGAACAGTCTTCACCAACATGCAGTGGAAGGAGAAGGAGAAAAAGGGGAAAGATTGTGGAGAATCTAATATTCTCACAACTATCGTACTTGGTCATCTTCATCATCCTTATCTGTATAACGGAGAGGAAAAATATGAAAGATGATCCTCTCAACTTCACTGTGTTAAATATTGTGATAGAAGTGATCAGTGCCTATGGAAATGTTGGGTTCACAGCAGGCTACAGCTGTGAACGGTTGATGAAGCCTGATAGTAGTTGCCAAAGTAAATGGTTTGGATTCTCGGGAAAATGGAGCGATGAAGGGAAAATAATTCTCATTTTGGCCATGTTTTTTGGTAGACTAAAGAAGTTTAATATGGATGGGGGTAGAGCATGGAAGCTCTTGTAA 1590 42.7 MMISASFVGKRLHRLCTCLSFKLECLGRSIWFLVSSFYSLVVLRVNPFWIQLCYFPCLSFQGFLVLKALKPRTYSFRPRNLDLFFTSVSAATVSSMSTVEMEVFSNNQLLILTLLMFVGGEVFTSMVELHLRRSKLEKPWIAENKIDSVTSINGSAPLKQVHRQIEGQTESLSTSESLKYRSIKFLGFVVMGYLVVVHVVGVALVSAYVALVSSARDVLKQKGLKLFTFSLFTTVSTFASCGFVPTNENMIVFSSNSGLLLIIIPQVLLGNTLFPSCLRFSIWTLGKFFNKAESNYLLMNAREIGFLYLLPSLHSTLLVPTVLGFILIQFTLLCSMDWNSEGLNGLNSYQKIIGALFQSVNSRHTGETIVDISILSPAILVLFVVMMYLPPYTSFLPIEDYEQSSPTCSGRRRRKRGKIVENLIFSQLSYLVIFIILICITERKNMKDDPLNFTVLNIVIEVISAYGNVGFTAGYSCERLMKPDSSCQSKWFGFSGKWSDEGKIILILAMFFGRLKKFNMDGGRAWKLL* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15655459 15663113 + Vvi11g880 Vvi11g880 772321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g880 529 Pfam Cation transport protein 174 516 IPR003445 GO:0006812|GO:0008324|GO:0055085
Vvi11g880 529 PANTHER SODIUM TRANSPORTER HKT1 40 528 - -
Vvi11g880 529 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 40 528 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g880 K24976 - vvi:100242150 946.036