Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g897 ATGGCTACCAAAAAGTGGCAGAAAAGCTACTTTGATGTGTTAGGTCTCTGCTGTTCATCAGAGGTCCCTCTGATTGAGAAGATTCTGAAGCCTCTAGATGGTGTCAAAGAGATTTCAGTCATTGTCCCATCCAGAACTCTCATTGTTGTCCATGACAATCTCCTCATTTCCCAGATTCAAATTGTTAAGGCACTAAACCAAGCAAGATTAGAGGCTAATGTTAGAATATATGGGGAAGTCGCTTATCAGAAGAAATGGCCTAGTCCTTTTGCAATTGTTTCTGGTATCTTACTCTTGCTATCATTTCTCAAATATGTGTATCAACCTTTCCGGTGGCTCGCTCTTGGAGCGGTTGCTGCCGGCATCTTTCCCATCGCCTGGAGAGGGATAGTGGCCATCCGAAACTTCACACTTGATATCAACATTCTTGTTCTCATCGCAGTGATTGGGACAATTGCTTTGAATGATTATTGGGAAGCTGGGTCCATAGTATTTCTCTTCACCATTGCAGAATGGCTTGAGTCAAGGGCTAGTCACAAGGCAACTGCAGTCATGTCATCGCTGATGAGTATAGCTCCTCAAAAGGCAGTGATAGCTGACACCGGAGAAATTGTAGAAGCCAACAGTGTCCTGGTGGACACAATCATCGCTGTTAAGACTGGAGAAGTCATACCTATTGATGGAATTGTAGTAGAAGGAAAATGTGAGGTCGATGAGAAGAGCTTAACAGGAGAGTCATTTCCAGTGGCCAAACAAAAGGACTCCACTGTTTGGGCTGGCACCATAAATCTAAATGGTTACATCAGTGTAAAAACTACAGCCCTAGCTGAGGACTGTGTGGTGGCCAAGATGGCAAAGCTAGTAGAAGAAGCTCAAAACAGCAAGTCCAAAACTCAGAGGTTCATAGACAAATGTACCAAGTTTTACACCCCAGTGGTAGTGCTAATATCGGCTGGGCTTGCGGGGATTCCTGCTGCCTTAAGGGTTCATGATCTAAGTCATTGGTTTCACCTATCACTGGTTGTACTAGTAAGTGCATGTCCATGTGCACTGATTCTCTCAACGCCAGTTGCTACATTCTGTGCACTTTCAAAGGCTGCTGTATCTGGGTTGCTCATCAAAGGAGGAGAGTATCTTGAAATTCTTGCTAAAATCAGGATCATGGCTTTTGACAAAACCGGTACAATTACAAGGGGTGAATTTGTTGTTAAGGATTTCCAGTCTCTGCGGGATGATGTTAGCTCCGATACATTGCTCTACTGGGTTTCTAGCATTGAGAGTAAGTCGAGTCATCCGATGGCAGCAGCTCTTTTTGATTATGGACTGTCACAATCCGTCGAGCCAAAGCCAGAAAATGTGGAAGAGTTTCAGAATTTTCCCGGGGAAGGAATCCATGGGAAAATTGATGGGAAAGACATCTATGTTGGAAACAGAAAAATCGCTCTAAGAGCTGGGTGTGAAACAGTTCCAACCATAGGAGAAGACAAGGAAGGAAAGACAATTGGGTATGTATACTCTGATGCAACTCCAACTGGAATTTTTACCCTCTCCGACGCTTGTCGAACAGGGGTTGTGGAGGCTATTAAAGAGCTGAAGTTATTGGGAATTAAATCTGCCATGCTTACAGGAGATAGTCATGCATCAGCTATGCATACACAAGATCAGCTAGGGCATACTCTAGAGGTTGTTCATGCAGAACTTTTACCTGAAGATAAGGCGAGAATCATAAAAGACTTTAAGGAGGAAGGACCAACAGCCATGATTGGTGATGGTGTAAATGATGCCCCTGCATTGGCCACAGCAGATATTGGTATCTCAATGGGCATTGCGGGTTCAGCACTTGCGACAGAGACAGGGCATGTGGTTCTTATGACAAATGATATTAGAAAAATACCCAAAGCTGTTCGGTTAGCAAGGAAAACCCACAGAAAAGTAGTTGAGAATGTCATTTTATCAATCACTACAAAGGCTGCCATCCTTGCCTTGGCCATTGCAGGTCACCCGCTTATTTGGGCAGCAGTTCTTGCTGATGTCGCCACTCATCTCATAATCATCAGCATAGTTGTTCCAACAGCATTTCTCAAAAGAAGTGTGAGCCTCAGAAGTGTTCTTCCCAGAGGTGTGCTTCAAGATGTCAGCCTGATCATTCCGGGTTGA 2157 44.18 MATKKWQKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGEVAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKSKTQRFIDKCTKFYTPVVVLISAGLAGIPAALRVHDLSHWFHLSLVVLVSACPCALILSTPVATFCALSKAAVSGLLIKGGEYLEILAKIRIMAFDKTGTITRGEFVVKDFQSLRDDVSSDTLLYWVSSIESKSSHPMAAALFDYGLSQSVEPKPENVEEFQNFPGEGIHGKIDGKDIYVGNRKIALRAGCETVPTIGEDKEGKTIGYVYSDATPTGIFTLSDACRTGVVEAIKELKLLGIKSAMLTGDSHASAMHTQDQLGHTLEVVHAELLPEDKARIIKDFKEEGPTAMIGDGVNDAPALATADIGISMGIAGSALATETGHVVLMTNDIRKIPKAVRLARKTHRKVVENVILSITTKAAILALAIAGHPLIWAAVLADVATHLIIISIVVPTAFLKRSVSLRSVLPRGVLQDVSLIIPG* 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16080036 16085813 + Vvi11g897 Vvi11g897 772338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g897 718 ProSitePatterns Hypothetical cof family signature 2. 588 610 - -
Vvi11g897 718 Gene3D - 2 76 - -
Vvi11g897 718 ProSiteProfiles Heavy-metal-associated domain profile. 8 74 IPR006121 GO:0046872
Vvi11g897 718 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 3 685 - -
Vvi11g897 718 Gene3D - 178 292 - -
Vvi11g897 718 CDD P-type_ATPase_HM 90 685 - -
Vvi11g897 718 Gene3D - 382 639 IPR023214 -
Vvi11g897 718 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi11g897 718 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi11g897 718 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi11g897 718 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 685 - -
Vvi11g897 718 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 666 IPR023298 -
Vvi11g897 718 Pfam haloacid dehalogenase-like hydrolase 385 602 - -
Vvi11g897 718 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 140 685 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vvi11g897 718 SFLD p-type atpase 372 641 IPR044492 -
Vvi11g897 718 SUPERFAMILY Calcium ATPase, transduction domain A 203 288 IPR008250 -
Vvi11g897 718 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 163 666 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi11g897 718 SFLD Haloacid Dehalogenase 372 641 - -
Vvi11g897 718 Pfam E1-E2 ATPase 199 367 - -
Vvi11g897 718 ProSitePatterns E1-E2 ATPases phosphorylation site. 391 397 IPR018303 -
Vvi11g897 718 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 140 685 - -
Vvi11g897 718 SUPERFAMILY HMA, heavy metal-associated domain 4 73 IPR036163 GO:0046872
Vvi11g897 718 Gene3D - 400 520 IPR023299 GO:0000166
Vvi11g897 718 PRINTS P-type cation-transporting ATPase superfamily signature 238 252 - -
Vvi11g897 718 PRINTS P-type cation-transporting ATPase superfamily signature 389 403 - -
Vvi11g897 718 PRINTS P-type cation-transporting ATPase superfamily signature 534 544 - -
Vvi11g897 718 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Vvi11g897 718 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Vvi11g897 718 SUPERFAMILY HAD-like 389 684 IPR036412 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g897 K01534 - vvi:100243678 1310.82