Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g90 | ATGATGAGTGGAAGAAATAGGTTTCCATTCACTGCAACTCAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTTCAAGTACATGGCTTCAGGGATGCCCATTCCTCCTGATCTCATCTTCTCCATCAAAAGAAGCTTGGACTCTCCACTCCCTACTTCAAAGCTCTTCCCAACCCACCAATCCCAACACATTGGGTGGAACTGTTTTCAGATGGGTTTGGGGAGGAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGGAAGAAATGGAGGTGTGCAAAGGAAGCATACCCAGATTCGAAGTACTGTGAGAGACATATGCACCGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTATGACACCCTCAAAAACACCACCAACAGTAACTACTCCTACTGCTACAATGGCAGCAAACCCACCACCACCAATCTCTTCAATCACTGTAAACTCCTCCAACCCCACTTCATACTCTCTAGCTTTAGAGACCCAAAATCACCACACCCATCGTCACCCTTCTTGCTACAACACCCATCTCCACCTCCCCTTCCTTTATCCCCATTCATCTTCTTCAAGGCCACCTGGGTTTGGAGGTGGGGTTGAGTTGTCACCTCAACACAACACCACCCATTTGCTTTTGGACTCTGGTTCATATTCCCAGACAGATTACAGAAACAGATATGTTCATGGATTGAAGGAGGAGGTGGATGAGCATGCTTTCTTCTCAGAACAACCTTCAGGGGCTACAAGGAGTTTTTCCGGCTCATCAATGGATGATCCTTGGCGGCTTACTCCACTAAAAATGAATTCTTCACCGTTAGACCATTCAAAACAGAGGAGCTGCTCTGTTTTACAGAGTGACTACTCTTGTTTGCAGCTTCAAAGCCTCAGTGATACCTCCAACCAGAAGCAGGATCAGCATTTCTATGTACTGGGTAGTAATCTCAAGTATGAAAAACATGAGAGAGAAGAACCCGAGAAGACGGTGCACCGCTTCTTCGATGAATGGCCACCCAAGAGCAGAGATCCATGGCCTGATTCAGAAGACAAGTCCCCCAGAGATGCATTGGTCTCAACCACCCAACTCTCAATTTCTATGCCAAACTCTTCATTTGACTTCTCCATCTCCAATTCTAGACCCCATAATGGTAGCTGA | 1164 | 46.91 | MMSGRNRFPFTATQWQELEHQALIFKYMASGMPIPPDLIFSIKRSLDSPLPTSKLFPTHQSQHIGWNCFQMGLGRKVDPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKPVEVMTPSKTPPTVTTPTATMAANPPPPISSITVNSSNPTSYSLALETQNHHTHRHPSCYNTHLHLPFLYPHSSSSRPPGFGGGVELSPQHNTTHLLLDSGSYSQTDYRNRYVHGLKEEVDEHAFFSEQPSGATRSFSGSSMDDPWRLTPLKMNSSPLDHSKQRSCSVLQSDYSCLQLQSLSDTSNQKQDQHFYVLGSNLKYEKHEREEPEKTVHRFFDEWPPKSRDPWPDSEDKSPRDALVSTTQLSISMPNSSFDFSISNSRPHNGS* | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1000358 | 1001747 | + | Vvi11g90 | Vvi11g90 | 771531 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g90 | 387 | ProSiteProfiles | QLQ domain profile. | 9 | 44 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Vvi11g90 | 387 | MobiDBLite | consensus disorder prediction | 126 | 142 | - | - | |
Vvi11g90 | 387 | MobiDBLite | consensus disorder prediction | 322 | 356 | - | - | |
Vvi11g90 | 387 | MobiDBLite | consensus disorder prediction | 322 | 387 | - | - | |
Vvi11g90 | 387 | Pfam | QLQ | 9 | 42 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Vvi11g90 | 387 | Pfam | WRC | 79 | 121 | IPR014977 | - | |
Vvi11g90 | 387 | SMART | QLQ_2 | 8 | 44 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Vvi11g90 | 387 | ProSiteProfiles | WRC domain profile. | 78 | 122 | IPR014977 | - | |
Vvi11g90 | 387 | MobiDBLite | consensus disorder prediction | 357 | 387 | - | - | |
Vvi11g90 | 387 | PANTHER | GROWTH-REGULATING FACTOR 5 | 4 | 365 | - | - | |
Vvi11g90 | 387 | PANTHER | - | 4 | 365 | IPR031137 | GO:0005634|GO:0006351|GO:0032502 | |
Vvi11g90 | 387 | MobiDBLite | consensus disorder prediction | 111 | 142 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13759 | PF08879 | WRC | 3.40E-21 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g90 | - | - | vvi:100261173 | 781.941 |