Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g90 ATGATGAGTGGAAGAAATAGGTTTCCATTCACTGCAACTCAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTTCAAGTACATGGCTTCAGGGATGCCCATTCCTCCTGATCTCATCTTCTCCATCAAAAGAAGCTTGGACTCTCCACTCCCTACTTCAAAGCTCTTCCCAACCCACCAATCCCAACACATTGGGTGGAACTGTTTTCAGATGGGTTTGGGGAGGAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGGAAGAAATGGAGGTGTGCAAAGGAAGCATACCCAGATTCGAAGTACTGTGAGAGACATATGCACCGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTATGACACCCTCAAAAACACCACCAACAGTAACTACTCCTACTGCTACAATGGCAGCAAACCCACCACCACCAATCTCTTCAATCACTGTAAACTCCTCCAACCCCACTTCATACTCTCTAGCTTTAGAGACCCAAAATCACCACACCCATCGTCACCCTTCTTGCTACAACACCCATCTCCACCTCCCCTTCCTTTATCCCCATTCATCTTCTTCAAGGCCACCTGGGTTTGGAGGTGGGGTTGAGTTGTCACCTCAACACAACACCACCCATTTGCTTTTGGACTCTGGTTCATATTCCCAGACAGATTACAGAAACAGATATGTTCATGGATTGAAGGAGGAGGTGGATGAGCATGCTTTCTTCTCAGAACAACCTTCAGGGGCTACAAGGAGTTTTTCCGGCTCATCAATGGATGATCCTTGGCGGCTTACTCCACTAAAAATGAATTCTTCACCGTTAGACCATTCAAAACAGAGGAGCTGCTCTGTTTTACAGAGTGACTACTCTTGTTTGCAGCTTCAAAGCCTCAGTGATACCTCCAACCAGAAGCAGGATCAGCATTTCTATGTACTGGGTAGTAATCTCAAGTATGAAAAACATGAGAGAGAAGAACCCGAGAAGACGGTGCACCGCTTCTTCGATGAATGGCCACCCAAGAGCAGAGATCCATGGCCTGATTCAGAAGACAAGTCCCCCAGAGATGCATTGGTCTCAACCACCCAACTCTCAATTTCTATGCCAAACTCTTCATTTGACTTCTCCATCTCCAATTCTAGACCCCATAATGGTAGCTGA 1164 46.91 MMSGRNRFPFTATQWQELEHQALIFKYMASGMPIPPDLIFSIKRSLDSPLPTSKLFPTHQSQHIGWNCFQMGLGRKVDPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKPVEVMTPSKTPPTVTTPTATMAANPPPPISSITVNSSNPTSYSLALETQNHHTHRHPSCYNTHLHLPFLYPHSSSSRPPGFGGGVELSPQHNTTHLLLDSGSYSQTDYRNRYVHGLKEEVDEHAFFSEQPSGATRSFSGSSMDDPWRLTPLKMNSSPLDHSKQRSCSVLQSDYSCLQLQSLSDTSNQKQDQHFYVLGSNLKYEKHEREEPEKTVHRFFDEWPPKSRDPWPDSEDKSPRDALVSTTQLSISMPNSSFDFSISNSRPHNGS* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1000358 1001747 + Vvi11g90 Vvi11g90 771531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g90 387 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi11g90 387 MobiDBLite consensus disorder prediction 126 142 - -
Vvi11g90 387 MobiDBLite consensus disorder prediction 322 356 - -
Vvi11g90 387 MobiDBLite consensus disorder prediction 322 387 - -
Vvi11g90 387 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi11g90 387 Pfam WRC 79 121 IPR014977 -
Vvi11g90 387 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi11g90 387 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Vvi11g90 387 MobiDBLite consensus disorder prediction 357 387 - -
Vvi11g90 387 PANTHER GROWTH-REGULATING FACTOR 5 4 365 - -
Vvi11g90 387 PANTHER - 4 365 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vvi11g90 387 MobiDBLite consensus disorder prediction 111 142 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g99 Vvi11g90 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13759 PF08879 WRC 3.40E-21 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g90 - - vvi:100261173 781.941