Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g914 | ATGCGTGGAACTGGAAAGAAAGCAGGACATCAGGAATCTGGAAAGTCTTGCTTTCCTAAAAGAAATATCGGGCCTAAGCTGAATGCAGCATTGCAGATTAAAAATGGTAGTAAAATATCTCAGACCAGGAAATGCAAGCCAAAATCAAAATCTCATGCAAAGACAATTGGTGCAATCCTGTCTAAGAGAACAACTACTGGCTCTCCAAGCAAGGGAAGCAGGAGTGGATCCACAACCAGAAAACTGATTCACAAGAAAACCCTGCATAAAGCCATTGATACTGAGTCTTCCAAGAAGGAGTCTTCATCAAAGCTTAAAGGTGAGAAGCCCCCACAAATTAGCACAAACAAAAATGGGGAAACTGTGGACAAAAATGTTAAACCTCAAAAATTAAAGAAAAGAGGAAAGCGGAAGCGGCGAAAGGATAATTCAGAGCTAGATGAAGCTTCTCGCTTGCAAAGAAGAACCAGGTACCTCTTGATCAAAATGAAACTGGAGCAGAATCTTATTGATGCTTACTCTGGGGAAGGTTGGAAAGGTCATAGTCGAGAAAAGATCAGGCCAGAGAAGGAACTACAAAGAGCTACGAAGCAAATATTGAAATGTAAACTTGGGATCCGTGATGCAATTCGCCAGCTGGAGTCACTGAGCTCCATAGGATGTATTGAAGATACTGCAATTGCTTCAGATGGATCTGTTTATCATGAACACATAATCTGTGCAAAGTGCAAGTTGCGGGAGGCTTTCCCAGATAATGATATTATACTCTGTGATGGGACGTGCAATTGTGCTTTCCACCAGAAATGTCTTGATCCTCCATTGGAAACTGAAAATATTCCTCCGGGAGACCAAGGTTGGTTTTGCAAGTTCTGCGAGTGTAAGATGGAAATACTAGAAGCAATGAATGCACATCTTGGAACCCGCTTCTCTGTGGACAGTACTTGGCAGGATATTTTCAAAGAAGAAGCTGCTTTGCCTGATGGTGGGAGTGCACTGCCCTATCCAGAGGAAGATTGGCCTTCTGATGATTCACAAGATCATGATTATGATCCTGAAAGAAATGAAAATAGCTGCAGCATCAGCACTGCTGGCACTGAAGGAAATGCTTCAGATGATACAAATAGTTCTTTAAGCTTGAGTTGGTCGTTTGAAGACGAAATCCTTTCTGGATCCAAAAGATCAGGGATTATCAGTGCAGATTCTGATGAAACATCTGATTGTGAAATCATAAGTGGTCGTAGGCAACGAAGAGCTGTTGATTATAGAAAGTTATATGATGAAATGTTTGGAAAGGATGCTCATGCAAATGAACAAGTTAGTGAAGATGAAGACTGGGGTCCTGCTAACAAAAGGCGGAGAGAAAAGGAGTCTGATGCAGCCAGCACCCTCATAACTCTATATGAAGGTGAGAAAAAGTTACCTAATGTGGAAACCATGGAAGCCAAACAAAAAATTTCTTCAGATCCACAAACTAAAAGGCCATTTTCCAGAATTCCACTTGATGCGGTTGAGAAGCTTCGCCAAGCATTTGGGGAGAATGAACTTCCCTCTAGAGATGTGAGGGAGAATCTTGCAAAGCAGTTGGGTCTTGATTATGAGAAGGTGAACAAATGGTTCAAAAATGCACGATATATAGCGCTAAAAACAAGAAAGGCAGAAAGAGCAAAACAACTTCAGACTTCTCCCAGAATCTCCAAGGAATCCAGATCAGAAATCGTGAAGGACAAAACTGTTGATCTAGTGGCATCAAGGGATAACTCATCAGCATCACTGGTCCGTGCACTAAAGAATTTGAAAAAGGTGCGGAGGAGAAAAAATCCAAAGCCAATAATAACCAGCCCTGTAAAGAAAAAGCATCATAGAAGGGCTTTACTTGAGTCACCTACAAATGACAAGGTTACTATGGAGTTTGACGATGATGTGAGCTTGAAGAAACAACTGAAGCTTTTGAAAGAAAAAAGTAAGAGGGACAAGCAAAGGGTCGACTTCAAGGAGGGAACTGGTGTACAAGATGCAGAGAAGGAGATGGAGAGACTCTGCCAAATTAAGGATAAGATAGAGAAGTTGAAGCAGGTAATACTGAGACTTCAATGTGACAAAACTAATCAATGGCAAGACCAGTCAGTGATCTATGTTCCTGTGGCAGAGCTAAGGGAGAAAGGTCGATTTTGCATCACATCTTGA | 2184 | 41.58 | MRGTGKKAGHQESGKSCFPKRNIGPKLNAALQIKNGSKISQTRKCKPKSKSHAKTIGAILSKRTTTGSPSKGSRSGSTTRKLIHKKTLHKAIDTESSKKESSSKLKGEKPPQISTNKNGETVDKNVKPQKLKKRGKRKRRKDNSELDEASRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGHSREKIRPEKELQRATKQILKCKLGIRDAIRQLESLSSIGCIEDTAIASDGSVYHEHIICAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLETENIPPGDQGWFCKFCECKMEILEAMNAHLGTRFSVDSTWQDIFKEEAALPDGGSALPYPEEDWPSDDSQDHDYDPERNENSCSISTAGTEGNASDDTNSSLSLSWSFEDEILSGSKRSGIISADSDETSDCEIISGRRQRRAVDYRKLYDEMFGKDAHANEQVSEDEDWGPANKRRREKESDAASTLITLYEGEKKLPNVETMEAKQKISSDPQTKRPFSRIPLDAVEKLRQAFGENELPSRDVRENLAKQLGLDYEKVNKWFKNARYIALKTRKAERAKQLQTSPRISKESRSEIVKDKTVDLVASRDNSSASLVRALKNLKKVRRRKNPKPIITSPVKKKHHRRALLESPTNDKVTMEFDDDVSLKKQLKLLKEKSKRDKQRVDFKEGTGVQDAEKEMERLCQIKDKIEKLKQVILRLQCDKTNQWQDQSVIYVPVAELREKGRFCITS* | 728 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 16762385 | 16772741 | + | Vvi11g914 | Vvi11g914 | 772355 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g914 | 727 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 288 | IPR013083 | - | |
Vvi11g914 | 727 | PANTHER | POLYCOMB PROTEIN PCL | 1 | 698 | - | - | |
Vvi11g914 | 727 | CDD | homeodomain | 492 | 544 | IPR001356 | GO:0003677 | |
Vvi11g914 | 727 | Gene3D | - | 496 | 562 | - | - | |
Vvi11g914 | 727 | Coils | Coil | 669 | 689 | - | - | |
Vvi11g914 | 727 | MobiDBLite | consensus disorder prediction | 434 | 458 | - | - | |
Vvi11g914 | 727 | CDD | PHD_PRHA_like | 240 | 291 | IPR045876 | - | |
Vvi11g914 | 727 | ProSiteProfiles | 'Homeobox' domain profile. | 489 | 549 | IPR001356 | GO:0003677 | |
Vvi11g914 | 727 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 1 | 698 | - | - | |
Vvi11g914 | 727 | Pfam | PHD-finger | 239 | 294 | IPR019787 | - | |
Vvi11g914 | 727 | Pfam | Homeodomain | 502 | 543 | IPR001356 | GO:0003677 | |
Vvi11g914 | 727 | SUPERFAMILY | FYVE/PHD zinc finger | 229 | 297 | IPR011011 | - | |
Vvi11g914 | 727 | MobiDBLite | consensus disorder prediction | 355 | 376 | - | - | |
Vvi11g914 | 727 | ProSitePatterns | Zinc finger PHD-type signature. | 240 | 291 | IPR019786 | - | |
Vvi11g914 | 727 | MobiDBLite | consensus disorder prediction | 1 | 149 | - | - | |
Vvi11g914 | 727 | MobiDBLite | consensus disorder prediction | 326 | 376 | - | - | |
Vvi11g914 | 727 | SUPERFAMILY | Homeodomain-like | 486 | 544 | IPR009057 | - | |
Vvi11g914 | 727 | SMART | PHD_3 | 239 | 292 | IPR001965 | - | |
Vvi11g914 | 727 | MobiDBLite | consensus disorder prediction | 88 | 106 | - | - | |
Vvi11g914 | 727 | ProSiteProfiles | Zinc finger PHD-type profile. | 237 | 294 | IPR019787 | - | |
Vvi11g914 | 727 | MobiDBLite | consensus disorder prediction | 107 | 122 | - | - | |
Vvi11g914 | 727 | MobiDBLite | consensus disorder prediction | 58 | 77 | - | - | |
Vvi11g914 | 727 | SMART | HOX_1 | 491 | 553 | IPR001356 | GO:0003677 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13760 | PF00628 | PHD | 1.30E-09 | CL0390 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g914 | - | - | vvi:100262260 | 1394.79 |