Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g914 ATGCGTGGAACTGGAAAGAAAGCAGGACATCAGGAATCTGGAAAGTCTTGCTTTCCTAAAAGAAATATCGGGCCTAAGCTGAATGCAGCATTGCAGATTAAAAATGGTAGTAAAATATCTCAGACCAGGAAATGCAAGCCAAAATCAAAATCTCATGCAAAGACAATTGGTGCAATCCTGTCTAAGAGAACAACTACTGGCTCTCCAAGCAAGGGAAGCAGGAGTGGATCCACAACCAGAAAACTGATTCACAAGAAAACCCTGCATAAAGCCATTGATACTGAGTCTTCCAAGAAGGAGTCTTCATCAAAGCTTAAAGGTGAGAAGCCCCCACAAATTAGCACAAACAAAAATGGGGAAACTGTGGACAAAAATGTTAAACCTCAAAAATTAAAGAAAAGAGGAAAGCGGAAGCGGCGAAAGGATAATTCAGAGCTAGATGAAGCTTCTCGCTTGCAAAGAAGAACCAGGTACCTCTTGATCAAAATGAAACTGGAGCAGAATCTTATTGATGCTTACTCTGGGGAAGGTTGGAAAGGTCATAGTCGAGAAAAGATCAGGCCAGAGAAGGAACTACAAAGAGCTACGAAGCAAATATTGAAATGTAAACTTGGGATCCGTGATGCAATTCGCCAGCTGGAGTCACTGAGCTCCATAGGATGTATTGAAGATACTGCAATTGCTTCAGATGGATCTGTTTATCATGAACACATAATCTGTGCAAAGTGCAAGTTGCGGGAGGCTTTCCCAGATAATGATATTATACTCTGTGATGGGACGTGCAATTGTGCTTTCCACCAGAAATGTCTTGATCCTCCATTGGAAACTGAAAATATTCCTCCGGGAGACCAAGGTTGGTTTTGCAAGTTCTGCGAGTGTAAGATGGAAATACTAGAAGCAATGAATGCACATCTTGGAACCCGCTTCTCTGTGGACAGTACTTGGCAGGATATTTTCAAAGAAGAAGCTGCTTTGCCTGATGGTGGGAGTGCACTGCCCTATCCAGAGGAAGATTGGCCTTCTGATGATTCACAAGATCATGATTATGATCCTGAAAGAAATGAAAATAGCTGCAGCATCAGCACTGCTGGCACTGAAGGAAATGCTTCAGATGATACAAATAGTTCTTTAAGCTTGAGTTGGTCGTTTGAAGACGAAATCCTTTCTGGATCCAAAAGATCAGGGATTATCAGTGCAGATTCTGATGAAACATCTGATTGTGAAATCATAAGTGGTCGTAGGCAACGAAGAGCTGTTGATTATAGAAAGTTATATGATGAAATGTTTGGAAAGGATGCTCATGCAAATGAACAAGTTAGTGAAGATGAAGACTGGGGTCCTGCTAACAAAAGGCGGAGAGAAAAGGAGTCTGATGCAGCCAGCACCCTCATAACTCTATATGAAGGTGAGAAAAAGTTACCTAATGTGGAAACCATGGAAGCCAAACAAAAAATTTCTTCAGATCCACAAACTAAAAGGCCATTTTCCAGAATTCCACTTGATGCGGTTGAGAAGCTTCGCCAAGCATTTGGGGAGAATGAACTTCCCTCTAGAGATGTGAGGGAGAATCTTGCAAAGCAGTTGGGTCTTGATTATGAGAAGGTGAACAAATGGTTCAAAAATGCACGATATATAGCGCTAAAAACAAGAAAGGCAGAAAGAGCAAAACAACTTCAGACTTCTCCCAGAATCTCCAAGGAATCCAGATCAGAAATCGTGAAGGACAAAACTGTTGATCTAGTGGCATCAAGGGATAACTCATCAGCATCACTGGTCCGTGCACTAAAGAATTTGAAAAAGGTGCGGAGGAGAAAAAATCCAAAGCCAATAATAACCAGCCCTGTAAAGAAAAAGCATCATAGAAGGGCTTTACTTGAGTCACCTACAAATGACAAGGTTACTATGGAGTTTGACGATGATGTGAGCTTGAAGAAACAACTGAAGCTTTTGAAAGAAAAAAGTAAGAGGGACAAGCAAAGGGTCGACTTCAAGGAGGGAACTGGTGTACAAGATGCAGAGAAGGAGATGGAGAGACTCTGCCAAATTAAGGATAAGATAGAGAAGTTGAAGCAGGTAATACTGAGACTTCAATGTGACAAAACTAATCAATGGCAAGACCAGTCAGTGATCTATGTTCCTGTGGCAGAGCTAAGGGAGAAAGGTCGATTTTGCATCACATCTTGA 2184 41.58 MRGTGKKAGHQESGKSCFPKRNIGPKLNAALQIKNGSKISQTRKCKPKSKSHAKTIGAILSKRTTTGSPSKGSRSGSTTRKLIHKKTLHKAIDTESSKKESSSKLKGEKPPQISTNKNGETVDKNVKPQKLKKRGKRKRRKDNSELDEASRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGHSREKIRPEKELQRATKQILKCKLGIRDAIRQLESLSSIGCIEDTAIASDGSVYHEHIICAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLETENIPPGDQGWFCKFCECKMEILEAMNAHLGTRFSVDSTWQDIFKEEAALPDGGSALPYPEEDWPSDDSQDHDYDPERNENSCSISTAGTEGNASDDTNSSLSLSWSFEDEILSGSKRSGIISADSDETSDCEIISGRRQRRAVDYRKLYDEMFGKDAHANEQVSEDEDWGPANKRRREKESDAASTLITLYEGEKKLPNVETMEAKQKISSDPQTKRPFSRIPLDAVEKLRQAFGENELPSRDVRENLAKQLGLDYEKVNKWFKNARYIALKTRKAERAKQLQTSPRISKESRSEIVKDKTVDLVASRDNSSASLVRALKNLKKVRRRKNPKPIITSPVKKKHHRRALLESPTNDKVTMEFDDDVSLKKQLKLLKEKSKRDKQRVDFKEGTGVQDAEKEMERLCQIKDKIEKLKQVILRLQCDKTNQWQDQSVIYVPVAELREKGRFCITS* 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16762385 16772741 + Vvi11g914 Vvi11g914 772355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g914 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Vvi11g914 727 PANTHER POLYCOMB PROTEIN PCL 1 698 - -
Vvi11g914 727 CDD homeodomain 492 544 IPR001356 GO:0003677
Vvi11g914 727 Gene3D - 496 562 - -
Vvi11g914 727 Coils Coil 669 689 - -
Vvi11g914 727 MobiDBLite consensus disorder prediction 434 458 - -
Vvi11g914 727 CDD PHD_PRHA_like 240 291 IPR045876 -
Vvi11g914 727 ProSiteProfiles 'Homeobox' domain profile. 489 549 IPR001356 GO:0003677
Vvi11g914 727 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 698 - -
Vvi11g914 727 Pfam PHD-finger 239 294 IPR019787 -
Vvi11g914 727 Pfam Homeodomain 502 543 IPR001356 GO:0003677
Vvi11g914 727 SUPERFAMILY FYVE/PHD zinc finger 229 297 IPR011011 -
Vvi11g914 727 MobiDBLite consensus disorder prediction 355 376 - -
Vvi11g914 727 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Vvi11g914 727 MobiDBLite consensus disorder prediction 1 149 - -
Vvi11g914 727 MobiDBLite consensus disorder prediction 326 376 - -
Vvi11g914 727 SUPERFAMILY Homeodomain-like 486 544 IPR009057 -
Vvi11g914 727 SMART PHD_3 239 292 IPR001965 -
Vvi11g914 727 MobiDBLite consensus disorder prediction 88 106 - -
Vvi11g914 727 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Vvi11g914 727 MobiDBLite consensus disorder prediction 107 122 - -
Vvi11g914 727 MobiDBLite consensus disorder prediction 58 77 - -
Vvi11g914 727 SMART HOX_1 491 553 IPR001356 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13760 PF00628 PHD 1.30E-09 CL0390 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g914 - - vvi:100262260 1394.79