Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g929 ATGGACAACACAGAGGAGTTCAAAAACTATTGGGAAACCAATATGTTTCTCCAAAGTGAAGAGTTCGACAGTTGGGGGGGCCTGGATGAGGCGTTTTCCGGCTACTACGATTCGAGTTCGCCGGACGGCGCAGCGTCGTCGGCGGCGTCGAAGAACATAGTTTCGGAGCGGAACAGGAGGAAGAAGCTGAACGAGAGGTTGTTCGCACTGAGAGCGGTGGTCCCCAATATCAGTAAGATGGATAAGGCGTCGATAATTAAAGATGCGATCGACTATATCCAAGACTTGCACGAGCAAGAGAGGAGAATTCAGGCCGAGATATCGGAGTTGGAGTCCGGAAAATCGAAGAAGAGTCCGCCGGGGTACGAATTCGACCAGGAGATTCCGGTGTTGGTATCGAAATCGAAGAAGAAGAGGACTCAGCACTGCTATGATTCCGGTGGATCAAGAGTTTCCCCAATCGAGGTCCTTGAGCTGAGGGTCGTTTACATGGGAGAAAAGACCGTGGTTGTGAGCCTCACATGTAGTAAAAGAACAGACACAATGGTAAAGCTGTGTGAAGTATTCGAATCTCTGAAGCTTAAAATCATTACAGCCAACATTACTGCTTTCTCTGGCAGGCTTTTGAAGACTGTTTTCGTTGAGGCAGATGAGGAGGAGAAAGATGTTCTAAAAATAAAGATTGAAACAGCCATAGCAGCTCTCAATGATCCACAGAGTCCTATGAGTATATGA 735 47.48 MDNTEEFKNYWETNMFLQSEEFDSWGGLDEAFSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIDYIQDLHEQERRIQAEISELESGKSKKSPPGYEFDQEIPVLVSKSKKKRTQHCYDSGGSRVSPIEVLELRVVYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITAFSGRLLKTVFVEADEEEKDVLKIKIETAIAALNDPQSPMSI* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17038388 17041543 - Vvi11g929 Vvi11g929 772370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g929 244 Coils Coil 93 113 - -
Vvi11g929 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Vvi11g929 244 PANTHER TRANSCRIPTION FACTOR BHLH35 4 238 - -
Vvi11g929 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 111 IPR036638 GO:0046983
Vvi11g929 244 Gene3D - 44 113 IPR036638 GO:0046983
Vvi11g929 244 SMART finulus 53 102 IPR011598 GO:0046983
Vvi11g929 244 Pfam Helix-loop-helix DNA-binding domain 54 96 IPR011598 GO:0046983
Vvi11g929 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 238 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13762 PF00010 HLH 2.00E-11 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g929 - - vvi:100244514 473.011