Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g949 ATGAGTCGTTTCAAGGGCTCGCCGTACCGGCGGCAAGATTTGGAGGTCGGAGACAGCCGGTCTGGAGGCTTCGACGGCGACGACGACGCCAGGGAAACTTCTTCTGGGCCCTTCGATATTGATAGCACCAAGAATATCCCCATCGCACGGCTCCGACGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGCCGATTTCGATACACATTGGACTTGAAAAAGGAAGAAGATAGGAAGCAGATAATAAGGAAGATTAGAGCACATGCACAAGTTATACGGGCTGCATATCTTTTTAAAGAAGCTGGGGATCGAGCAAATGGGATACCAATATCACCTCCAATCCCCAACGGTGATTATGGCATTGGACAAGAGGAGCTGGCTTCAATGACAAGGGATCACAATTCTAATGCTCTGCAGCAATATGATGGGGTTAAAGGGTTAGCAGAGTTGCTAAAAACAAATCTAGAGAAGGGAATTCTTGGAGATGATGCTGATTTACTACGACGAAGGAATGCATTTGGATCAAACACTTATCCCCGAAAAAAAGGAAGGAGTTTCTGGATGTTTCTCTGGGAAGCTTGGCAAGATTTAACCTTAATCATCTTGATGATAGCTGCAATTGCTTCCTTGGCGCTGGGTATAAAGACAGAGGGTATTAAAGAAGGATGGTATGATGGGGGGAGCATTGCCTTTGCAGTTATTCTTGTTATAGTTGTTACAGCTGTAAGTGATTACAGACAATCCCTTCAATTTCAAAGTCTAAATGATGAAAAGAGAAATATACATATGGAGATCATTAGAGGCGGTAGAAGAGTTGAGGTTTCAATATTTGATATTGTCGTTGGTGATGTTGTACCCCTCAACATAGGGAACCAGGTCCCTGCTGATGGAATTTTGATTTCTGGTCACTCTCTTGCAATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCACAAGGACTCAAAGGCACCATTTCTAATGGCGGGCTGCAAAGTAGCAGATGGGAGTGGCATTATGCTGGTAACAAGTGTTGGGATAAATACTGAATGGGGATTGCTCATGGCTAGTATATCAGAAGACACTGGTGAAGAGACGCCATTGCAGGTACGATTAAATGGGGTTGCGACTTTCATTGGTATAGTTGGGCTCCTAGTGGCTTTGGTTGTCTTGGTTGTTCTTTTGGCAAGGTACTTTACTGGCCATACCAAAAATTCAGATGGAAGTAAGCAATTTATTCCAGGCCGGACAGGTGTTGGTGATGCGGTAGATGGAGCAATTAAAATTGTTACTGTTGCGGTCACAATTGTAGTTGTTGCAGTGCCTGAGGGGCTTCCTTTAGCTGTTACCTTAACCCTTGCCTACTCAATGAGAAAAATGATGGTTGACAAAGCTTTGGTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGATGACTGTTGTTGTGGCTTATGCTGGTGGGAAGAAAATTGATACACCGGATAGAGGCTCACTCTCGTCTTCCCTGCTATCCTCTCTACTTATTGAAGGCATTGCACAAAATACAAATGGCAGTGTTTTTATTCCTGAGGGTGGTGGAGATGTAGAGGTTTCTGGGTCCCCAACAGAAAAGGCCATTCTCAATTGGGGAATCAAGATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTGCCTGATTCTCAAGTTCACTTGCACTGGAAAGGGGCGGCTGAAATAGTGTTAGCCTCCTGTACTAGGTATATTGATGAAAATGACAATGTGGTCCCAATGACTGAAGATAAGGTGTTATTTTTCAAGAAAGCCATTGAAGATATGGCTGCAGGTAGTTTGCGTTGCGTTGCCATTGCATACAGACCCTATGAAATGGAAAACGTCCCAACTGATGAAGAGCAACTGGATCAGTGGGTACTTCCTGAGGATGACCTTGTTTTGCTGGCTATTGTTGGTATAAAGGATCCTTGCCGACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGGTACGGATGGTTACAGGTGACAATCTTCAAACAGCTAAAGCAATAGCCTTGGAATGTGGAATACTAGTTTCAGATGCAGATGCTACCGAGCCAAATCTCATCGAAGGAAAGTCATTTCGTGCCTTACCTGAATTGCAAAGACAGGATATTGCTGATAAGATATCGGTCATGGGAAGGTCTTCTCCAAATGACAAGCTTCTTCTTGTGCAAGCATTGAAAAAGAAAGGGCATGTTGTTGCTGTAACTGGAGATGGAACTAATGATGCTCCTGCACTACACGAGGCAGATATTGGTCTTGCAATGGGCATTTCAGGAACAGAGGTTGCAAAAGAGAGCTCTGACATCATTATCTTGGATGACAATTTTGCGTCAGTTGTCAAGGTTGTCAGATGGGGACGATCTGTATATGCAAATATACAGAAATTCATCCAGTTTCAGCTCACAGTTAATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGCTCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTTGCATTGGCCACTGAACCACCAACAGATCACCTGATGCACAGGCCTCCAGTTGGTCGAAGGGAACCATTGATAACAAATATCATGTGGAGGAATTTGTTGATTCAGGCCCTATATCAAGTGATCGTCCTGCTTGTCCTCAATTTCCGAGGTACAAGTATTCTGAAGTTAGAAGGTGACACTCCTGAACGTGCTAGCAAAGAGAAGAATACAGTGATATTCAATGCTTTTGTTCTTTGTCAGATATTCAATGAGTTTAATGCACGGAAGCCGGATGAAATTAATGTATTCAAAGGAGTCACTACCAACCGTCTTTTTATTGGGATAGTGGGAATAACTCTCGTGCTTCAGATCCTTATCATCGAATTTCTTGGGAAGTTTACATCAACTGTCAGATTGAATTGGCAGCTTTGGCTTGTTTGTATCGGTATTGGTATTATCAGTTGGCCTCTTGCGGCTCTTGGAAAACTGATGCCAGTCCCAAAAACTCCTCTTAGCAAGTTCTTTACAAGGATATGTCGCCGCAGGCGAGATTCCCAAATAAGTAGATAG 3243 43.63 MSRFKGSPYRRQDLEVGDSRSGGFDGDDDARETSSGPFDIDSTKNIPIARLRRWRQAALVLNASRRFRYTLDLKKEEDRKQIIRKIRAHAQVIRAAYLFKEAGDRANGIPISPPIPNGDYGIGQEELASMTRDHNSNALQQYDGVKGLAELLKTNLEKGILGDDADLLRRRNAFGSNTYPRKKGRSFWMFLWEAWQDLTLIILMIAAIASLALGIKTEGIKEGWYDGGSIAFAVILVIVVTAVSDYRQSLQFQSLNDEKRNIHMEIIRGGRRVEVSIFDIVVGDVVPLNIGNQVPADGILISGHSLAIDESSMTGESKIVHKDSKAPFLMAGCKVADGSGIMLVTSVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLLVALVVLVVLLARYFTGHTKNSDGSKQFIPGRTGVGDAVDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMVDKALVRRLSACETMGSSTTICSDKTGTLTLNQMTVVVAYAGGKKIDTPDRGSLSSSLLSSLLIEGIAQNTNGSVFIPEGGGDVEVSGSPTEKAILNWGIKIGMNFEAVRSGSSIIQVFPFNSEKKRGGVAIKLPDSQVHLHWKGAAEIVLASCTRYIDENDNVVPMTEDKVLFFKKAIEDMAAGSLRCVAIAYRPYEMENVPTDEEQLDQWVLPEDDLVLLAIVGIKDPCRPGVREAVQLCQKAGVKVRMVTGDNLQTAKAIALECGILVSDADATEPNLIEGKSFRALPELQRQDIADKISVMGRSSPNDKLLLVQALKKKGHVVAVTGDGTNDAPALHEADIGLAMGISGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGNVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRPPVGRREPLITNIMWRNLLIQALYQVIVLLVLNFRGTSILKLEGDTPERASKEKNTVIFNAFVLCQIFNEFNARKPDEINVFKGVTTNRLFIGIVGITLVLQILIIEFLGKFTSTVRLNWQLWLVCIGIGIISWPLAALGKLMPVPKTPLSKFFTRICRRRRDSQISR* 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17591727 17640205 + Vvi11g949 Vvi11g949 772390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g949 1080 PANTHER CATION TRANSPORTING ATPASE 17 1071 - -
Vvi11g949 1080 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 136 1057 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi11g949 1080 MobiDBLite consensus disorder prediction 1 42 - -
Vvi11g949 1080 SUPERFAMILY HAD-like 483 898 IPR036412 -
Vvi11g949 1080 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 760 874 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi11g949 1080 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 230 401 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi11g949 1080 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 425 520 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi11g949 1080 Gene3D - 166 361 - -
Vvi11g949 1080 Pfam haloacid dehalogenase-like hydrolase 482 807 - -
Vvi11g949 1080 PANTHER CALCIUM-TRANSPORTING ATPASE 17 1071 - -
Vvi11g949 1080 CDD P-type_ATPase_Ca_PMCA-like 167 926 - -
Vvi11g949 1080 SUPERFAMILY Calcium ATPase, transmembrane domain M 144 1057 IPR023298 -
Vvi11g949 1080 SMART Cation_ATPase_N_a_2 138 215 IPR004014 -
Vvi11g949 1080 MobiDBLite consensus disorder prediction 1 35 - -
Vvi11g949 1080 PRINTS P-type cation-transporting ATPase superfamily signature 309 323 - -
Vvi11g949 1080 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Vvi11g949 1080 PRINTS P-type cation-transporting ATPase superfamily signature 686 697 - -
Vvi11g949 1080 PRINTS P-type cation-transporting ATPase superfamily signature 708 718 - -
Vvi11g949 1080 PRINTS P-type cation-transporting ATPase superfamily signature 793 812 - -
Vvi11g949 1080 PRINTS P-type cation-transporting ATPase superfamily signature 817 829 - -
Vvi11g949 1080 Gene3D - 48 102 - -
Vvi11g949 1080 Pfam Ca2+-ATPase N terminal autoinhibitory domain 37 77 IPR024750 GO:0005516
Vvi11g949 1080 ProSitePatterns E1-E2 ATPases phosphorylation site. 487 493 IPR018303 -
Vvi11g949 1080 Pfam Cation transporter/ATPase, N-terminus 144 210 IPR004014 -
Vvi11g949 1080 Gene3D - 193 1047 - -
Vvi11g949 1080 Pfam E1-E2 ATPase 263 463 - -
Vvi11g949 1080 SUPERFAMILY Calcium ATPase, transduction domain A 263 358 IPR008250 -
Vvi11g949 1080 SFLD Haloacid Dehalogenase 467 845 - -
Vvi11g949 1080 Gene3D - 482 838 IPR023214 -
Vvi11g949 1080 PRINTS Sodium/potassium-transporting ATPase signature 228 248 - -
Vvi11g949 1080 PRINTS Sodium/potassium-transporting ATPase signature 478 499 - -
Vvi11g949 1080 PRINTS Sodium/potassium-transporting ATPase signature 604 622 - -
Vvi11g949 1080 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 492 690 IPR023299 GO:0000166
Vvi11g949 1080 SFLD p-type atpase 467 845 IPR044492 -
Vvi11g949 1080 Gene3D - 495 693 IPR023299 GO:0000166
Vvi11g949 1080 Pfam Cation transporting ATPase, C-terminus 878 1054 IPR006068 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g949 K01537 - vvi:100251227 2016.51