Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g949 | ATGAGTCGTTTCAAGGGCTCGCCGTACCGGCGGCAAGATTTGGAGGTCGGAGACAGCCGGTCTGGAGGCTTCGACGGCGACGACGACGCCAGGGAAACTTCTTCTGGGCCCTTCGATATTGATAGCACCAAGAATATCCCCATCGCACGGCTCCGACGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGCCGATTTCGATACACATTGGACTTGAAAAAGGAAGAAGATAGGAAGCAGATAATAAGGAAGATTAGAGCACATGCACAAGTTATACGGGCTGCATATCTTTTTAAAGAAGCTGGGGATCGAGCAAATGGGATACCAATATCACCTCCAATCCCCAACGGTGATTATGGCATTGGACAAGAGGAGCTGGCTTCAATGACAAGGGATCACAATTCTAATGCTCTGCAGCAATATGATGGGGTTAAAGGGTTAGCAGAGTTGCTAAAAACAAATCTAGAGAAGGGAATTCTTGGAGATGATGCTGATTTACTACGACGAAGGAATGCATTTGGATCAAACACTTATCCCCGAAAAAAAGGAAGGAGTTTCTGGATGTTTCTCTGGGAAGCTTGGCAAGATTTAACCTTAATCATCTTGATGATAGCTGCAATTGCTTCCTTGGCGCTGGGTATAAAGACAGAGGGTATTAAAGAAGGATGGTATGATGGGGGGAGCATTGCCTTTGCAGTTATTCTTGTTATAGTTGTTACAGCTGTAAGTGATTACAGACAATCCCTTCAATTTCAAAGTCTAAATGATGAAAAGAGAAATATACATATGGAGATCATTAGAGGCGGTAGAAGAGTTGAGGTTTCAATATTTGATATTGTCGTTGGTGATGTTGTACCCCTCAACATAGGGAACCAGGTCCCTGCTGATGGAATTTTGATTTCTGGTCACTCTCTTGCAATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCACAAGGACTCAAAGGCACCATTTCTAATGGCGGGCTGCAAAGTAGCAGATGGGAGTGGCATTATGCTGGTAACAAGTGTTGGGATAAATACTGAATGGGGATTGCTCATGGCTAGTATATCAGAAGACACTGGTGAAGAGACGCCATTGCAGGTACGATTAAATGGGGTTGCGACTTTCATTGGTATAGTTGGGCTCCTAGTGGCTTTGGTTGTCTTGGTTGTTCTTTTGGCAAGGTACTTTACTGGCCATACCAAAAATTCAGATGGAAGTAAGCAATTTATTCCAGGCCGGACAGGTGTTGGTGATGCGGTAGATGGAGCAATTAAAATTGTTACTGTTGCGGTCACAATTGTAGTTGTTGCAGTGCCTGAGGGGCTTCCTTTAGCTGTTACCTTAACCCTTGCCTACTCAATGAGAAAAATGATGGTTGACAAAGCTTTGGTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGATGACTGTTGTTGTGGCTTATGCTGGTGGGAAGAAAATTGATACACCGGATAGAGGCTCACTCTCGTCTTCCCTGCTATCCTCTCTACTTATTGAAGGCATTGCACAAAATACAAATGGCAGTGTTTTTATTCCTGAGGGTGGTGGAGATGTAGAGGTTTCTGGGTCCCCAACAGAAAAGGCCATTCTCAATTGGGGAATCAAGATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTGCCTGATTCTCAAGTTCACTTGCACTGGAAAGGGGCGGCTGAAATAGTGTTAGCCTCCTGTACTAGGTATATTGATGAAAATGACAATGTGGTCCCAATGACTGAAGATAAGGTGTTATTTTTCAAGAAAGCCATTGAAGATATGGCTGCAGGTAGTTTGCGTTGCGTTGCCATTGCATACAGACCCTATGAAATGGAAAACGTCCCAACTGATGAAGAGCAACTGGATCAGTGGGTACTTCCTGAGGATGACCTTGTTTTGCTGGCTATTGTTGGTATAAAGGATCCTTGCCGACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGGTACGGATGGTTACAGGTGACAATCTTCAAACAGCTAAAGCAATAGCCTTGGAATGTGGAATACTAGTTTCAGATGCAGATGCTACCGAGCCAAATCTCATCGAAGGAAAGTCATTTCGTGCCTTACCTGAATTGCAAAGACAGGATATTGCTGATAAGATATCGGTCATGGGAAGGTCTTCTCCAAATGACAAGCTTCTTCTTGTGCAAGCATTGAAAAAGAAAGGGCATGTTGTTGCTGTAACTGGAGATGGAACTAATGATGCTCCTGCACTACACGAGGCAGATATTGGTCTTGCAATGGGCATTTCAGGAACAGAGGTTGCAAAAGAGAGCTCTGACATCATTATCTTGGATGACAATTTTGCGTCAGTTGTCAAGGTTGTCAGATGGGGACGATCTGTATATGCAAATATACAGAAATTCATCCAGTTTCAGCTCACAGTTAATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGCTCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTTGCATTGGCCACTGAACCACCAACAGATCACCTGATGCACAGGCCTCCAGTTGGTCGAAGGGAACCATTGATAACAAATATCATGTGGAGGAATTTGTTGATTCAGGCCCTATATCAAGTGATCGTCCTGCTTGTCCTCAATTTCCGAGGTACAAGTATTCTGAAGTTAGAAGGTGACACTCCTGAACGTGCTAGCAAAGAGAAGAATACAGTGATATTCAATGCTTTTGTTCTTTGTCAGATATTCAATGAGTTTAATGCACGGAAGCCGGATGAAATTAATGTATTCAAAGGAGTCACTACCAACCGTCTTTTTATTGGGATAGTGGGAATAACTCTCGTGCTTCAGATCCTTATCATCGAATTTCTTGGGAAGTTTACATCAACTGTCAGATTGAATTGGCAGCTTTGGCTTGTTTGTATCGGTATTGGTATTATCAGTTGGCCTCTTGCGGCTCTTGGAAAACTGATGCCAGTCCCAAAAACTCCTCTTAGCAAGTTCTTTACAAGGATATGTCGCCGCAGGCGAGATTCCCAAATAAGTAGATAG | 3243 | 43.63 | MSRFKGSPYRRQDLEVGDSRSGGFDGDDDARETSSGPFDIDSTKNIPIARLRRWRQAALVLNASRRFRYTLDLKKEEDRKQIIRKIRAHAQVIRAAYLFKEAGDRANGIPISPPIPNGDYGIGQEELASMTRDHNSNALQQYDGVKGLAELLKTNLEKGILGDDADLLRRRNAFGSNTYPRKKGRSFWMFLWEAWQDLTLIILMIAAIASLALGIKTEGIKEGWYDGGSIAFAVILVIVVTAVSDYRQSLQFQSLNDEKRNIHMEIIRGGRRVEVSIFDIVVGDVVPLNIGNQVPADGILISGHSLAIDESSMTGESKIVHKDSKAPFLMAGCKVADGSGIMLVTSVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLLVALVVLVVLLARYFTGHTKNSDGSKQFIPGRTGVGDAVDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMVDKALVRRLSACETMGSSTTICSDKTGTLTLNQMTVVVAYAGGKKIDTPDRGSLSSSLLSSLLIEGIAQNTNGSVFIPEGGGDVEVSGSPTEKAILNWGIKIGMNFEAVRSGSSIIQVFPFNSEKKRGGVAIKLPDSQVHLHWKGAAEIVLASCTRYIDENDNVVPMTEDKVLFFKKAIEDMAAGSLRCVAIAYRPYEMENVPTDEEQLDQWVLPEDDLVLLAIVGIKDPCRPGVREAVQLCQKAGVKVRMVTGDNLQTAKAIALECGILVSDADATEPNLIEGKSFRALPELQRQDIADKISVMGRSSPNDKLLLVQALKKKGHVVAVTGDGTNDAPALHEADIGLAMGISGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGNVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRPPVGRREPLITNIMWRNLLIQALYQVIVLLVLNFRGTSILKLEGDTPERASKEKNTVIFNAFVLCQIFNEFNARKPDEINVFKGVTTNRLFIGIVGITLVLQILIIEFLGKFTSTVRLNWQLWLVCIGIGIISWPLAALGKLMPVPKTPLSKFFTRICRRRRDSQISR* | 1081 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 17591727 | 17640205 | + | Vvi11g949 | Vvi11g949 | 772390 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g949 | 1080 | PANTHER | CATION TRANSPORTING ATPASE | 17 | 1071 | - | - | |
Vvi11g949 | 1080 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 136 | 1057 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Vvi11g949 | 1080 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Vvi11g949 | 1080 | SUPERFAMILY | HAD-like | 483 | 898 | IPR036412 | - | |
Vvi11g949 | 1080 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 760 | 874 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi11g949 | 1080 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 230 | 401 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi11g949 | 1080 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 425 | 520 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi11g949 | 1080 | Gene3D | - | 166 | 361 | - | - | |
Vvi11g949 | 1080 | Pfam | haloacid dehalogenase-like hydrolase | 482 | 807 | - | - | |
Vvi11g949 | 1080 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 17 | 1071 | - | - | |
Vvi11g949 | 1080 | CDD | P-type_ATPase_Ca_PMCA-like | 167 | 926 | - | - | |
Vvi11g949 | 1080 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 144 | 1057 | IPR023298 | - | |
Vvi11g949 | 1080 | SMART | Cation_ATPase_N_a_2 | 138 | 215 | IPR004014 | - | |
Vvi11g949 | 1080 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Vvi11g949 | 1080 | PRINTS | P-type cation-transporting ATPase superfamily signature | 309 | 323 | - | - | |
Vvi11g949 | 1080 | PRINTS | P-type cation-transporting ATPase superfamily signature | 485 | 499 | - | - | |
Vvi11g949 | 1080 | PRINTS | P-type cation-transporting ATPase superfamily signature | 686 | 697 | - | - | |
Vvi11g949 | 1080 | PRINTS | P-type cation-transporting ATPase superfamily signature | 708 | 718 | - | - | |
Vvi11g949 | 1080 | PRINTS | P-type cation-transporting ATPase superfamily signature | 793 | 812 | - | - | |
Vvi11g949 | 1080 | PRINTS | P-type cation-transporting ATPase superfamily signature | 817 | 829 | - | - | |
Vvi11g949 | 1080 | Gene3D | - | 48 | 102 | - | - | |
Vvi11g949 | 1080 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 37 | 77 | IPR024750 | GO:0005516 | |
Vvi11g949 | 1080 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 487 | 493 | IPR018303 | - | |
Vvi11g949 | 1080 | Pfam | Cation transporter/ATPase, N-terminus | 144 | 210 | IPR004014 | - | |
Vvi11g949 | 1080 | Gene3D | - | 193 | 1047 | - | - | |
Vvi11g949 | 1080 | Pfam | E1-E2 ATPase | 263 | 463 | - | - | |
Vvi11g949 | 1080 | SUPERFAMILY | Calcium ATPase, transduction domain A | 263 | 358 | IPR008250 | - | |
Vvi11g949 | 1080 | SFLD | Haloacid Dehalogenase | 467 | 845 | - | - | |
Vvi11g949 | 1080 | Gene3D | - | 482 | 838 | IPR023214 | - | |
Vvi11g949 | 1080 | PRINTS | Sodium/potassium-transporting ATPase signature | 228 | 248 | - | - | |
Vvi11g949 | 1080 | PRINTS | Sodium/potassium-transporting ATPase signature | 478 | 499 | - | - | |
Vvi11g949 | 1080 | PRINTS | Sodium/potassium-transporting ATPase signature | 604 | 622 | - | - | |
Vvi11g949 | 1080 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 492 | 690 | IPR023299 | GO:0000166 | |
Vvi11g949 | 1080 | SFLD | p-type atpase | 467 | 845 | IPR044492 | - | |
Vvi11g949 | 1080 | Gene3D | - | 495 | 693 | IPR023299 | GO:0000166 | |
Vvi11g949 | 1080 | Pfam | Cation transporting ATPase, C-terminus | 878 | 1054 | IPR006068 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g949 | K01537 | - | vvi:100251227 | 2016.51 |