Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g963 ATGGCCGTCGATTTTCTAGGATTCTCCAAGATGGACGAGCAGATGGCTATCCAGGAAGCCGCATCGGCCGGTTTGAAGAGCATGGAGCACCTGATCCTCCTCTTGAATCATCACCATCCTCAATCTCAGCAAATCAACCACTTCGATTGCAGAGAAATCACCGATTTCACAGTTTCCAAGTTCAAGCAAGTCATTTCCATCCTGAACCGGACCGGCCACGCCCGGTTCCGTCGCGGTCCGGTTACTTCTTCTCCTTCTCACCCATTTCATTCGAACCTGATTCTATCTGCGAAGCCTGATCCGCTCAAATCGGAAGGCAACGCTAGCGTGTCGTCGACGACTTCGTCTTTCTTGTCGTCGATCACCGGAGACGGCAGCGTGTCGAACGGAAAATTAGGGACTCCTCTGTTCGCACCTCCTCCGGCTCCGGCGGTTTCCGCCGGTAAACCGCCTCTTTCGTCGTCTCAACGGAGGAAATGTCATGAGCATGGATCCTCCGACAACATCTCCGGAAAACTCTCTGTTTCCGGCCGCTGCCATTGCTCGAAAAGAAGGAAAAATCGTGTGAAGAGGACGATCAGAGTTCCTGCGATAAGCTCGAAGATCGCCGATATTCCCGCCGACGAGTACTCTTGGAGAAAGTACGGTCAGAAGCCGATCAAGGGCTCACCATACCCACGAGGCTACTACAAATGTAGCAGCGTGAGAGGCTGCCCAGCGAGAAAACACGTGGAGCGCGCACCAGACGATCCGGCGATGCTCATCGTCACCTACGAGGGAGAGCACCGCCACTCTCAAACTCCGGCACCGGCCGGTGGGCTCATGTTCCCATCAACCTGA 840 54.64 MAVDFLGFSKMDEQMAIQEAASAGLKSMEHLILLLNHHHPQSQQINHFDCREITDFTVSKFKQVISILNRTGHARFRRGPVTSSPSHPFHSNLILSAKPDPLKSEGNASVSSTTSSFLSSITGDGSVSNGKLGTPLFAPPPAPAVSAGKPPLSSSQRRKCHEHGSSDNISGKLSVSGRCHCSKRRKNRVKRTIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAPDDPAMLIVTYEGEHRHSQTPAPAGGLMFPST* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17821899 17823266 + Vvi11g963 Vvi11g963 772404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g963 279 MobiDBLite consensus disorder prediction 78 115 - -
Vvi11g963 279 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 108 268 - -
Vvi11g963 279 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 7 89 - -
Vvi11g963 279 SMART WRKY_cls 206 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g963 279 Pfam Plant zinc cluster domain 157 204 IPR018872 -
Vvi11g963 279 ProSiteProfiles WRKY domain profile. 201 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g963 279 Gene3D WRKY domain 179 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi11g963 279 SUPERFAMILY WRKY DNA-binding domain 204 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi11g963 279 MobiDBLite consensus disorder prediction 131 176 - -
Vvi11g963 279 Pfam WRKY DNA -binding domain 208 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g963 279 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 108 268 IPR044810 GO:0003700
Vvi11g963 279 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 89 IPR044810 GO:0003700
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13765 PF03106 WRKY 4.70E-26 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g963 - - vvi:100251308 540.036