Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g963 | ATGGCCGTCGATTTTCTAGGATTCTCCAAGATGGACGAGCAGATGGCTATCCAGGAAGCCGCATCGGCCGGTTTGAAGAGCATGGAGCACCTGATCCTCCTCTTGAATCATCACCATCCTCAATCTCAGCAAATCAACCACTTCGATTGCAGAGAAATCACCGATTTCACAGTTTCCAAGTTCAAGCAAGTCATTTCCATCCTGAACCGGACCGGCCACGCCCGGTTCCGTCGCGGTCCGGTTACTTCTTCTCCTTCTCACCCATTTCATTCGAACCTGATTCTATCTGCGAAGCCTGATCCGCTCAAATCGGAAGGCAACGCTAGCGTGTCGTCGACGACTTCGTCTTTCTTGTCGTCGATCACCGGAGACGGCAGCGTGTCGAACGGAAAATTAGGGACTCCTCTGTTCGCACCTCCTCCGGCTCCGGCGGTTTCCGCCGGTAAACCGCCTCTTTCGTCGTCTCAACGGAGGAAATGTCATGAGCATGGATCCTCCGACAACATCTCCGGAAAACTCTCTGTTTCCGGCCGCTGCCATTGCTCGAAAAGAAGGAAAAATCGTGTGAAGAGGACGATCAGAGTTCCTGCGATAAGCTCGAAGATCGCCGATATTCCCGCCGACGAGTACTCTTGGAGAAAGTACGGTCAGAAGCCGATCAAGGGCTCACCATACCCACGAGGCTACTACAAATGTAGCAGCGTGAGAGGCTGCCCAGCGAGAAAACACGTGGAGCGCGCACCAGACGATCCGGCGATGCTCATCGTCACCTACGAGGGAGAGCACCGCCACTCTCAAACTCCGGCACCGGCCGGTGGGCTCATGTTCCCATCAACCTGA | 840 | 54.64 | MAVDFLGFSKMDEQMAIQEAASAGLKSMEHLILLLNHHHPQSQQINHFDCREITDFTVSKFKQVISILNRTGHARFRRGPVTSSPSHPFHSNLILSAKPDPLKSEGNASVSSTTSSFLSSITGDGSVSNGKLGTPLFAPPPAPAVSAGKPPLSSSQRRKCHEHGSSDNISGKLSVSGRCHCSKRRKNRVKRTIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAPDDPAMLIVTYEGEHRHSQTPAPAGGLMFPST* | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 17821899 | 17823266 | + | Vvi11g963 | Vvi11g963 | 772404 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g963 | 279 | MobiDBLite | consensus disorder prediction | 78 | 115 | - | - | |
Vvi11g963 | 279 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 108 | 268 | - | - | |
Vvi11g963 | 279 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 7 | 89 | - | - | |
Vvi11g963 | 279 | SMART | WRKY_cls | 206 | 266 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g963 | 279 | Pfam | Plant zinc cluster domain | 157 | 204 | IPR018872 | - | |
Vvi11g963 | 279 | ProSiteProfiles | WRKY domain profile. | 201 | 267 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g963 | 279 | Gene3D | WRKY domain | 179 | 268 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g963 | 279 | SUPERFAMILY | WRKY DNA-binding domain | 204 | 266 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g963 | 279 | MobiDBLite | consensus disorder prediction | 131 | 176 | - | - | |
Vvi11g963 | 279 | Pfam | WRKY DNA -binding domain | 208 | 264 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g963 | 279 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 108 | 268 | IPR044810 | GO:0003700 | |
Vvi11g963 | 279 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 7 | 89 | IPR044810 | GO:0003700 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13765 | PF03106 | WRKY | 4.70E-26 | CL0274 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g963 | - | - | vvi:100251308 | 540.036 |