Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g969 ATGAGTCTTCTCGGTTTCTCGTGTCTCGTCTTTTGGCTCTTCTTCTGTGTAGATGGTGGAGTTGGAGCCGATGATGTGGTGGTGGTGGCCGCTAATCCTTCGCAGTCTCCGCCACTGCCGCCGCCGGCCTTGCCCAGGCCTAATTTTTCTCCGTTTAGGCCGAGTATAGCGGTGATAGTGGGGGTTCTCACTACTATGTTCTCCATTACTTTTCTTCTTCTTCTCTACGCCAAACACTGCAAGAGAGGAAACGGCGTCGTTTACACCGGAACGCCTCCGCTTTCCTCCGCTGCCAGGAAAAACTCCGGCATTGACAGAACGGTGATCGAGTCGCTGCCGGTTTTCCGATTCGCGTCGCTCCGCGGCCAGAAGGACGGGCTCGAGTGCGCTGTTTGCTTGAACCGGTTCGAGCCCACCGAAATCCTGCGGCTGTTGCCGAAATGCAAGCACGCTTTCCACGTCGAATGCGTGGACACCTGGCTCGACGCCCACTCCACCTGCCCTCTCTGCCGCTACCGAGTCGACCCGGAGGATATCCTCCTCGTGGAAGAGCCGAAAATCTCGGTGGCACCACCGCCGGAGCCAGACCCTCCCGAGGTCGAAAAACCGGACGCCGAACCACGAAACCCAGAAGTCCGGCGAGTTTCGGGGAGGCATTCGTCGGCGGGGGAGAGGCGCAGTGGGTTAGTCCAAATCGTTTTACACAAACCTGACGAAACGACGTCATCGAGGAGGTCCCTCGACAGCTCCAGCTCCAGCTCAAGAAAGAGAAACGAGCCCGTAGCCGTGGGATGCTTTGACAGACCGAGAAAGGACGAATTGCTGCTTACCAGCGAAGACAGAAACAGCTTCGAGCGGCGGCTGGACCACCGGATCATAGTTTCCGCCGCTGGATCGGGAGGGTTCCACCAGCGGTGGAGCGACGTACAGCCGTCGGATCTACTGTATCTACGGTCAGAAATGATAATAAGCGACAACCGTCGATTGTCATCCTGTCATGGAACCATTGAAGGCGGCAGCTGGAGTGGCAGAAGTGTAATTAATTCAAGAAGCGTGTCGGAAATCACGGGCCTCAGCAGACTAGGTAGTAACTACCATCACCTCGACCGTCACCATCAACAGCGACAGGCAGGTGTCGTGTCGAGATGGTTGGCCTGGATCTCGCAATCGCGGCCATCTGTACGGTCAGAACGAGCCGGCAGGAGGCATGGATATTCCAGACGACTGGTGATGACCAATCAACACGTGGATCATAAGGGCAATGCATGGAATCACTGGAGAGCAACTTCTTTTTTATATTTAATTTTTTTTAAAAAGATATTATTCATATCTCGGATATATATCCGATGCCACGTTGGCTATTTTTTCAAATAA 1374 54.37 MSLLGFSCLVFWLFFCVDGGVGADDVVVVAANPSQSPPLPPPALPRPNFSPFRPSIAVIVGVLTTMFSITFLLLLYAKHCKRGNGVVYTGTPPLSSAARKNSGIDRTVIESLPVFRFASLRGQKDGLECAVCLNRFEPTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEEPKISVAPPPEPDPPEVEKPDAEPRNPEVRRVSGRHSSAGERRSGLVQIVLHKPDETTSSRRSLDSSSSSSRKRNEPVAVGCFDRPRKDELLLTSEDRNSFERRLDHRIIVSAAGSGGFHQRWSDVQPSDLLYLRSEMIISDNRRLSSCHGTIEGGSWSGRSVINSRSVSEITGLSRLGSNYHHLDRHHQQRQAGVVSRWLAWISQSRPSVRSERAGRRHGYSRRLVMTNQHVDHKGNAWNHWRATSFLYLIFFKKILFISRIYIRCHVGYFFK* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17936592 17938168 - Vvi11g969 Vvi11g969 772410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g969 457 PANTHER RING-H2 FINGER PROTEIN ATL43 22 391 - -
Vvi11g969 457 SUPERFAMILY RING/U-box 106 176 - -
Vvi11g969 457 MobiDBLite consensus disorder prediction 244 258 - -
Vvi11g969 457 MobiDBLite consensus disorder prediction 184 263 - -
Vvi11g969 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Vvi11g969 457 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 391 - -
Vvi11g969 457 CDD RING-H2_EL5_like 128 171 - -
Vvi11g969 457 Pfam Ring finger domain 128 171 IPR001841 -
Vvi11g969 457 MobiDBLite consensus disorder prediction 197 221 - -
Vvi11g969 457 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vvi11g969 457 SMART ring_2 129 170 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g969 K19041 - vvi:100259882 724.546