Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g985 ATGCCTCGCCTCCTAGCAGAAGGCTGCCGACCACCGCATCATTCTCCAGCTTTATTCTTTTTCCTAGTAGCAGCAGTTGTGCTTCTAATATTTCTGATTCTCATTTTAGTCTCATGGAAATTTAAAAATTTAGCAGAGCTGAAGAAGTTGGTTACAGAAACTAAAAGGCTTCAAGAAGCCAAAGATTTTTGTAGTGGAAATCTTCGAACAGTAGGCCAATTTGACTTCCGCTCATTAAAGAAGGCCACAAAGAACTTTCACCCCAGTAATCTTCTAGGAAGAGGTGGATTTGGGCCTGTTTATCGGGGAAAATTAAGAGATGGAAAGTTGGTGGCTGTAAAGAAATTATCTCTTGACAAGTCCCAGCAAGGAGAAGCAGAGTTCCTTGCAGAGGTGAAGATGATCACAAGCATCCAACACAAGAATCTGGTTCGTCTTCTTGGATGTTGCTCAGATGGGCCTCAAAGGTTGCTTGTGTATGAATACATGAAAAATAGGAGCTTGGACCTCATCATATATGAAAGAAATGATCAGTTCCTGAATTGGAATACTCGATTCCAAATAATACTTGGCATTGCTCGAGGATTGCAGTACCTACATGAAGATTCACACCTGAGAATTGTTCACAGAGATATCAAAGCAAGCAACATTCTTCTTGATGACAGATTTCAACCAAGGATTGGAGATTTTGGGCTGGCTAGGTTCTTCCCAGAGGACGAGGCTTATCTCAGCACTGCCTTTGCTGGAACTCTAGGTTATACAGCACCTGAATATGCCATTAGAGGAGAATTGTCTGAAAAGGCTGACATCTACAGCTTTGGAGTTTTGGTACTTGAAATCATCGGCTGCAGGAAAAACACCGATCTTACTTTATCATCAGAAATGCAATATCTCCCTGAATATGCTTGGAAGCTATATGAGAAGTCCAGGGTGATTGATCTGGTAGATCCAAGAATTCAAGAAGATGGGTTTGTGGAGAACCATGTGTTGCAAGTAAACCATGTGTTGCAAGTAATCCATGTGGCCTTGTTTTGTCTTCAACCTTATGCAAACTTGAGACCGCCAATGTCAGAGGTCGTAGCAGTGTTAACATGCAGAGCTGATATGGTTGGAACACCCATGAAACCGGCCTTTTTGGACCGCAAGCAGGACAAGAACATCTCTTCGGATACTATTTCAGAGGCTTTCCCTTCTCCTCTGCACAGTGATTCTCCTTCCTCATCTCAACAGCCAAAGATTTCAGAGGCTTTCCCTTCTCCTCTGCACAGTGATTCTCCTTCCTCATCTCAACAGCCAAAGATTTCAGAGGCTTTCCCTTCTCCTCTGCACGGTGATTCTCCTTCCTCATCTCAACAGCCAAAGTGA 1365 43.08 MPRLLAEGCRPPHHSPALFFFLVAAVVLLIFLILILVSWKFKNLAELKKLVTETKRLQEAKDFCSGNLRTVGQFDFRSLKKATKNFHPSNLLGRGGFGPVYRGKLRDGKLVAVKKLSLDKSQQGEAEFLAEVKMITSIQHKNLVRLLGCCSDGPQRLLVYEYMKNRSLDLIIYERNDQFLNWNTRFQIILGIARGLQYLHEDSHLRIVHRDIKASNILLDDRFQPRIGDFGLARFFPEDEAYLSTAFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIIGCRKNTDLTLSSEMQYLPEYAWKLYEKSRVIDLVDPRIQEDGFVENHVLQVNHVLQVIHVALFCLQPYANLRPPMSEVVAVLTCRADMVGTPMKPAFLDRKQDKNISSDTISEAFPSPLHSDSPSSSQQPKISEAFPSPLHSDSPSSSQQPKISEAFPSPLHGDSPSSSQQPK* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18220059 18229561 - Vvi11g985 Vvi11g985 772426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g985 454 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Vvi11g985 454 SUPERFAMILY Protein kinase-like (PK-like) 71 363 IPR011009 -
Vvi11g985 454 Gene3D Transferase(Phosphotransferase) domain 1 163 373 - -
Vvi11g985 454 ProSiteProfiles Protein kinase domain profile. 86 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g985 454 CDD STKc_IRAK 92 364 - -
Vvi11g985 454 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 62 391 - -
Vvi11g985 454 PANTHER RECEPTOR-LIKE KINASE 62 391 - -
Vvi11g985 454 Pfam Protein kinase domain 87 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g985 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Vvi11g985 454 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g985 454 MobiDBLite consensus disorder prediction 391 454 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76076 PF07714 PK_Tyr_Ser-Thr 2.70E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g985 - - vvi:100246157 837.41