Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g997 | ATGGCTTCTAATCACAATTGGCTCGCCTTCTCTCTCTCCAACAACTCTCTCCCTTCCGACTCCTCCCAACTCTGCCTTTTCGAAGCCCTCTCCGCCTCAACCCATCACAATGGGGGTGTTGATAGAGAGCAGGGTTTTCCGGATCGTGGTGGCAGTGACCTCATCGGCGGCCCCAAGCTGGAGGACTTCCTCGCTGCGAGCTTCTTACGTGGGTTTTCTTCAGAGCAAAGCGAGGCTCAGAAGCAGCTGGCGCTGACGCCGGAGCCGTCGCCGAAGAAGTCCGTCGACACCTTCGGCCAACGGACCTCCATTTACAGAGGAGTTACACGACATAGATGGACAGGGAGATATGAAGCCCATCTCTGGGACAACAGCTGCAGAAGAGAAGGACAGAGCCGGAAGGGACGACAAGTTTATTTGGGTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTGTTTCTAACTATGAGAAAGAACTTGAGAATATGAAGAACATGACTAGGCAAGAGTTTGTTGCTTCACTCAGAAGGAAAAGCTCTGGATTCTCGAGAGGAGCCTCTATTTACAGAGGAGTCACCAGACACCATCAGCATGGGAGATGGCAAGCCAGAATAGGAAGAGTTGCTGGGAACAAAGATCTCTATCTTGGAACATTCAGCACTCAAGAAGAAGCAGCCGAAGCCTATGACATTGCTGCAATCAAATTCAGAGGCCTAAATGCAGTAACCAACTTCGACATGAGCCGATACGATGTCAAAAGCATTGCCAACAGCAATCTCCCCATCGGAGGAGCAATAACCACTGGCAAACCAAAAACATCTCCCTCTGATTCTGCTTCCGATAGTGGAAGTCGCCGGTCTGAGGAGCAGGTTCAGGTTCTCTCTGGCCCATCAAATACACTCATTTTTTCCAAACCCCTCAAGCAAGATCACCATCAATCGGTTGATTACTGGTCCGTACTGGGGTACCAGGCCTCCACATTGAACAGTGTTGTGAAGAACCCCATATTGGAATCCTCCTTTCCATTTCAGACTTCTAGCAACTTGACCATGGATTTCTCCACAGCTTCTGCAGGCTTCCTCTGCAATGGTGGTGGGTACATTCAACAACAACAGAGCAACAGTAGTAGCAGCACTGCTTCAAGTTCAAACTCAATCCCATATGCAACACCCGTTAATGGTTTAAACAGCAGTACTAGCTATGAGGTCTCTGGGTACAACAGCTGGGCTGCTGCGACTGCTGCCGCTGCTGCTGCTGCTGCTGCACCATCTCTTCATTCATTCCAAGCTGCAAAGCCCAGTCTCTCAGTGTTCCAAACCCCGATATTTGGCATGGAATGA | 1395 | 50.11 | MASNHNWLAFSLSNNSLPSDSSQLCLFEALSASTHHNGGVDREQGFPDRGGSDLIGGPKLEDFLAASFLRGFSSEQSEAQKQLALTPEPSPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELENMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGAITTGKPKTSPSDSASDSGSRRSEEQVQVLSGPSNTLIFSKPLKQDHHQSVDYWSVLGYQASTLNSVVKNPILESSFPFQTSSNLTMDFSTASAGFLCNGGGYIQQQQSNSSSSTASSSNSIPYATPVNGLNSSTSYEVSGYNSWAAATAAAAAAAAAPSLHSFQAAKPSLSVFQTPIFGME* | 465 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 18415747 | 18418615 | - | Vvi11g997 | Vvi11g997 | 772438 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g997 | 464 | Gene3D | AP2/ERF domain | 206 | 266 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | Gene3D | AP2/ERF domain | 104 | 172 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | SMART | rav1_2 | 104 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | SMART | rav1_2 | 206 | 270 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | Pfam | AP2 domain | 206 | 256 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | Pfam | AP2 domain | 104 | 162 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 76 | 403 | - | - | |
Vvi11g997 | 464 | CDD | AP2 | 205 | 266 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | ProSiteProfiles | AP2/ERF domain profile. | 206 | 264 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | CDD | AP2 | 103 | 172 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 76 | 403 | - | - | |
Vvi11g997 | 464 | PRINTS | Ethylene responsive element binding protein signature | 105 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | PRINTS | Ethylene responsive element binding protein signature | 246 | 266 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | MobiDBLite | consensus disorder prediction | 281 | 313 | - | - | |
Vvi11g997 | 464 | SUPERFAMILY | DNA-binding domain | 205 | 266 | IPR016177 | GO:0003677 | |
Vvi11g997 | 464 | ProSiteProfiles | AP2/ERF domain profile. | 104 | 170 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g997 | 464 | SUPERFAMILY | DNA-binding domain | 103 | 172 | IPR016177 | GO:0003677 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13767 | PF00847 | AP2 | 3.30E-13 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g997 | K09285 | - | vvi:100259877 | 848.58 |