Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g997 ATGGCTTCTAATCACAATTGGCTCGCCTTCTCTCTCTCCAACAACTCTCTCCCTTCCGACTCCTCCCAACTCTGCCTTTTCGAAGCCCTCTCCGCCTCAACCCATCACAATGGGGGTGTTGATAGAGAGCAGGGTTTTCCGGATCGTGGTGGCAGTGACCTCATCGGCGGCCCCAAGCTGGAGGACTTCCTCGCTGCGAGCTTCTTACGTGGGTTTTCTTCAGAGCAAAGCGAGGCTCAGAAGCAGCTGGCGCTGACGCCGGAGCCGTCGCCGAAGAAGTCCGTCGACACCTTCGGCCAACGGACCTCCATTTACAGAGGAGTTACACGACATAGATGGACAGGGAGATATGAAGCCCATCTCTGGGACAACAGCTGCAGAAGAGAAGGACAGAGCCGGAAGGGACGACAAGTTTATTTGGGTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTGTTTCTAACTATGAGAAAGAACTTGAGAATATGAAGAACATGACTAGGCAAGAGTTTGTTGCTTCACTCAGAAGGAAAAGCTCTGGATTCTCGAGAGGAGCCTCTATTTACAGAGGAGTCACCAGACACCATCAGCATGGGAGATGGCAAGCCAGAATAGGAAGAGTTGCTGGGAACAAAGATCTCTATCTTGGAACATTCAGCACTCAAGAAGAAGCAGCCGAAGCCTATGACATTGCTGCAATCAAATTCAGAGGCCTAAATGCAGTAACCAACTTCGACATGAGCCGATACGATGTCAAAAGCATTGCCAACAGCAATCTCCCCATCGGAGGAGCAATAACCACTGGCAAACCAAAAACATCTCCCTCTGATTCTGCTTCCGATAGTGGAAGTCGCCGGTCTGAGGAGCAGGTTCAGGTTCTCTCTGGCCCATCAAATACACTCATTTTTTCCAAACCCCTCAAGCAAGATCACCATCAATCGGTTGATTACTGGTCCGTACTGGGGTACCAGGCCTCCACATTGAACAGTGTTGTGAAGAACCCCATATTGGAATCCTCCTTTCCATTTCAGACTTCTAGCAACTTGACCATGGATTTCTCCACAGCTTCTGCAGGCTTCCTCTGCAATGGTGGTGGGTACATTCAACAACAACAGAGCAACAGTAGTAGCAGCACTGCTTCAAGTTCAAACTCAATCCCATATGCAACACCCGTTAATGGTTTAAACAGCAGTACTAGCTATGAGGTCTCTGGGTACAACAGCTGGGCTGCTGCGACTGCTGCCGCTGCTGCTGCTGCTGCTGCACCATCTCTTCATTCATTCCAAGCTGCAAAGCCCAGTCTCTCAGTGTTCCAAACCCCGATATTTGGCATGGAATGA 1395 50.11 MASNHNWLAFSLSNNSLPSDSSQLCLFEALSASTHHNGGVDREQGFPDRGGSDLIGGPKLEDFLAASFLRGFSSEQSEAQKQLALTPEPSPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELENMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGAITTGKPKTSPSDSASDSGSRRSEEQVQVLSGPSNTLIFSKPLKQDHHQSVDYWSVLGYQASTLNSVVKNPILESSFPFQTSSNLTMDFSTASAGFLCNGGGYIQQQQSNSSSSTASSSNSIPYATPVNGLNSSTSYEVSGYNSWAAATAAAAAAAAAPSLHSFQAAKPSLSVFQTPIFGME* 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18415747 18418615 - Vvi11g997 Vvi11g997 772438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g997 464 Gene3D AP2/ERF domain 206 266 IPR036955 GO:0003700|GO:0006355
Vvi11g997 464 Gene3D AP2/ERF domain 104 172 IPR036955 GO:0003700|GO:0006355
Vvi11g997 464 SMART rav1_2 104 176 IPR001471 GO:0003700|GO:0006355
Vvi11g997 464 SMART rav1_2 206 270 IPR001471 GO:0003700|GO:0006355
Vvi11g997 464 Pfam AP2 domain 206 256 IPR001471 GO:0003700|GO:0006355
Vvi11g997 464 Pfam AP2 domain 104 162 IPR001471 GO:0003700|GO:0006355
Vvi11g997 464 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 76 403 - -
Vvi11g997 464 CDD AP2 205 266 IPR001471 GO:0003700|GO:0006355
Vvi11g997 464 ProSiteProfiles AP2/ERF domain profile. 206 264 IPR001471 GO:0003700|GO:0006355
Vvi11g997 464 CDD AP2 103 172 IPR001471 GO:0003700|GO:0006355
Vvi11g997 464 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 403 - -
Vvi11g997 464 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Vvi11g997 464 PRINTS Ethylene responsive element binding protein signature 246 266 IPR001471 GO:0003700|GO:0006355
Vvi11g997 464 MobiDBLite consensus disorder prediction 281 313 - -
Vvi11g997 464 SUPERFAMILY DNA-binding domain 205 266 IPR016177 GO:0003677
Vvi11g997 464 ProSiteProfiles AP2/ERF domain profile. 104 170 IPR001471 GO:0003700|GO:0006355
Vvi11g997 464 SUPERFAMILY DNA-binding domain 103 172 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g942 Vvi11g997 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13767 PF00847 AP2 3.30E-13 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g997 K09285 - vvi:100259877 848.58