Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g998 ATGTATTCCCACAGTCAATTCGACGGCAACGCCGCCTTCTCTGGCGGGGGATTCATGCCCTCACAGGCCACTCAGGCCGCCGAACCTGGTTTTTCTCCTGCCAGAAATCGGGATACACAAGCGTTGCTTCCCTTGACCGTGAAGCAGATAAGTGAAGCTTTTCTCTCAAGCGATGATAAATCCAATTTTCTCATTGATGGTGTCGAAGTGAACAATGTCACACTTGTGGGGATGGTATTCAACAAAGCTGAAAGGGTTACTGATGTTGGTTTTATGCTGGATGATGGAACAGGGCGTATTGACTGTAACAGATGGGTCAATGAAGCTGTAGACACAAAGGAAATGGAAGGAATTCTAGATGGCATGTATGTTCGAGTTCATGGACACTTGAAGGGTTTTCAGGGTAAAAGGCATTTAAATGTCTTCTCTATTAGGCCTGTGACTGACTTTAATGAGATTGCCAGCCACTTCATTGAGTGTATCTATGTGCATATCTACAACACTAAATCACGGGTACAGGCTGGTGGCCCTACTCAGTCCCATGTTACAAATCCGGCCATTGGTACCCCTTTAAAGGGTTACCAAGCTTCTCAACCAAATCAATTCTCTGGGCAATATGGTGCTGGACTTAAGGGCGTTGATCAACTGGTCATAGATTATTTGCAGCAACCTCAGTCCCTGGCTCGAGACCAGGGGGTAGGCCGGGATGAGCTTGCCCAACAGCTAAATGTTCCAGTCGATAAAATCATGGAATCTATTAGATCACTCGAAGAGGAAGGCCTGATTTACTCAACAATTGATGAATGGCATTACAAGTCAACTGGCAATGGTTGA 834 45.8 MYSHSQFDGNAAFSGGGFMPSQATQAAEPGFSPARNRDTQALLPLTVKQISEAFLSSDDKSNFLIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGMYVRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTKSRVQAGGPTQSHVTNPAIGTPLKGYQASQPNQFSGQYGAGLKGVDQLVIDYLQQPQSLARDQGVGRDELAQQLNVPVDKIMESIRSLEEEGLIYSTIDEWHYKSTGNG* 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18423128 18429414 - Vvi11g998 Vvi11g998 772439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g998 277 Gene3D - 34 169 IPR012340 -
Vvi11g998 277 Pfam Replication protein A C terminal 164 268 IPR014892 -
Vvi11g998 277 Pfam OB-fold nucleic acid binding domain 73 146 IPR004365 GO:0003676
Vvi11g998 277 SUPERFAMILY Nucleic acid-binding proteins 42 169 IPR012340 -
Vvi11g998 277 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A-LIKE 1 277 - -
Vvi11g998 277 Gene3D - 205 276 IPR036388 -
Vvi11g998 277 SUPERFAMILY Winged helix DNA-binding domain 209 275 IPR036390 -
Vvi11g998 277 PIRSF RPA32 1 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi11g998 277 CDD RPA2_DBD_D 72 164 - -
Vvi11g998 277 PANTHER REPLICATION PROTEIN A-RELATED 1 277 IPR040260 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g998 K10739 - vvi:100254758 554.673