Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11randomg8 ATGGCATTGCTTCGCAAATTGTTCTATCGTAAGCCGCCTGATGGGCTCCTCGAGATCTGTGATAGAGTTCACGTTTTTGATTGCTGCTTTACTACTGATGCTTGGGAAGAAGAAAACTATAAAGTTTACATCAGAGGCATAGTTGGTCAACTTCGAGATCACATTCCTGATGCCTGGCTCTCACTTGGGCCAAATAATTTGCTGCTAATGCACTGTGAACGGGGTGGTTGGCCAATTTTGGCATTCATGCTTGCTGCACTCCTGATATACCGGAAACACTACACTGGGGAGCAGAAAACTCTGGAGATGATCTACAAGCAGTCTCCTTGCGAGCTTTTACAGTGTCTGTCTCCACTGAATCCAGTTCCTTCTCAAACGAGGTATCTACAGTATATCTCAAGGAGAAATATGGCATCAGAATGGCCTCCATTGGATAGGGCACTCACCTTGGATTGCGTCATTATTAGATTAGTTCCTGATTTTGATGGAGAGGGGGGTTGCCGTCCAATATTTCGGATATATGGACAAGATCCATTCCTTGTTGCTGATCGGACTCCCAAATTGTTGTTTTCAACACCCAAAAAAAGTAAAACTATTCGACACTACAAGCAGGAGGAATGTGAACTAGTTAAAATTGACATCAATTGCCATATTCAAGGAGATGTTGTGCTCGAGTGTATTAACTTGAATGATGACACAGAATATGAGGAAATGATATTTCGGCTCATGTTTAACACAGCTTTTATAAGGTCAAATATTTTAATGCTTAATCGTGATGAAATCGATATATTGTGGAATGCTAAGGATCAATTTCCAAAGGATTTTAGAGCAGAGGTTCTTTTTTCAGATATGGATGCTGCTGCTTCTGTTGTTACAGTGGATTTGTCTTGCTTTGAGGAGAAGGATGGACTTCCAGTGGAAGCATTTGCCAAAGTTCATGAAATTTTTAGCCATGTGGATTGGCTAGATCCAAAAACAGATGCTGCTTTAAATGTGCTTCAACAAATAACCGCATCAAATGTTGTCCAAGGAAGGGTAGAAACTGATTCCCCTGGGAGCGTAGAAACTAGCACTTCATTGCAGGAATTAATTACTGAAAAGGTTCAGGGGAAACAGAAGCCAGCATCTTCAGAGGATAATGCTGAGAAATTTTCATCCTTTGCTCTAGAGAATAAGCATTTCCTGTCACAAAAACCATCTGAAGGTGCAGATGTGAATGAAAGGAAGGCTGAGCCTCAACTTCAGGAGAGACAACAGACTGCAGCAATGGAAAGAGAAACTATGAACTCCACAACCTTCAGTATAAAGAATGATTCTGGGTCCTCATCAGAGCCATCTACATTTGCAGACATGAGTAAGAAGAAGCCTGTGTCAAGATACCATAGTTCATCCTCAGCAACCGGCATTACGCCTCTGTTTCCTGAATATATCTCATCAGACCCAAGCCTAGATTTTTCAGATGCGCATAAATCTGTGGAGCAGAAAGGTGTTTCGATTTCACCACCAACACCACTAGGCCCACACCAACCGCTTCCAATTCAACCAACCTTGACAGCCACTTCCAAATCAACACACCTTACACTTGCCAAACAATCTGAAAAATATTTACAAGGTAGAGATCAGTCATCATTGGTTCCTCCACTACCTGCACCTGAGACTCCAGTTTCAAGTATCAGTTTTCATGAATCATCATCTAATTCCACTTCCCCCTCTCCAGCTCTTATCAGCTGTACCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCTTCTCATTCTGGAAAAACTACTTAACAAGGGCAGTGTCAGGAAGCTTATGGGCTGAGACACAAAAATCTGGTGAAGCTTCCAAGGCTCCAGAGATTGATATGTCAGAGCTTGAGAGCCTTTTCTCTGCAGCAGCTCCAAAATCAGATCATGGGAACTCTAGTGGGAAATCAAATTTGCGCGCCCCAGCTGGGTCTAAATTTGACAAAGTGCAACTGATTGAACACAGGAGAGCCTACAATTGTGAAATCATGCTTTCGAAGGTGAAGGTGCCATTGCATGAATTAATGAATTCAGTGCTTGCTTTAGAGGATTCAGCTTTAGATGTTGATCAGGTTGATAACCTCATAAAGTTTTGTCCAACAAAAGACGAGATCGAGCTACTTAAGGGCTACAAGGGAGAAAAGGAAAAGTTAGGAAAATGTGAACAGTTCTTGTTAGAGTTGATGCAAGTACCACGAGTAGAAACTAAGCTCAGAGTTTTCTCATTTAAAATACAGTTTCCTTCCCTGGTTTCTTATCTTAGAACAAGCCTAAATGTTGTAAATTCTGCAGCAGAAGAGGCAAGTTATTCTCCTATAAAAAACTCTCTGAAATTGAAAAGAATCATGCAGACAATCCTTCAATTAGGAAATGCTTTGAACCAGGGAACTTCTAGAGGCTCTGCTATTGGATTTAGGTTGGATAGCCTTCTCAAAATTGCTGATACACGCGCCCGGAACAAAAAGACAACTCTCATGCATTACCTTTGTAAGGTGCTTGCTGATAAACTACCAGAAGTTTTAGATTTTTCTAAAGACCTTGCCAGCTTGGAACCTGCATCAAAGATACAACTGAAATTTTTGGCAGAGGAAATGCAAGCGATTAGCAAAGGATTGGAGAAAGTTATGCAGGAATTGTCCAGCTCCGAAAATGATGGTCCTATATCTGAAAATTTCTGTAAGACTCTGAAGAAGTTCCTTCATTTTGCTGAAACTGAAGTGAGATCTTTGGCTTCATTGTACTCTGGGGTGGGTAGGAATGTGGATGCACTGATTCTTTATTTTGGTGAAGATCCAGCTCGCTGCCCATTTTGA 2844 41.7 MALLRKLFYRKPPDGLLEICDRVHVFDCCFTTDAWEEENYKVYIRGIVGQLRDHIPDAWLSLGPNNLLLMHCERGGWPILAFMLAALLIYRKHYTGEQKTLEMIYKQSPCELLQCLSPLNPVPSQTRYLQYISRRNMASEWPPLDRALTLDCVIIRLVPDFDGEGGCRPIFRIYGQDPFLVADRTPKLLFSTPKKSKTIRHYKQEECELVKIDINCHIQGDVVLECINLNDDTEYEEMIFRLMFNTAFIRSNILMLNRDEIDILWNAKDQFPKDFRAEVLFSDMDAAASVVTVDLSCFEEKDGLPVEAFAKVHEIFSHVDWLDPKTDAALNVLQQITASNVVQGRVETDSPGSVETSTSLQELITEKVQGKQKPASSEDNAEKFSSFALENKHFLSQKPSEGADVNERKAEPQLQERQQTAAMERETMNSTTFSIKNDSGSSSEPSTFADMSKKKPVSRYHSSSSATGITPLFPEYISSDPSLDFSDAHKSVEQKGVSISPPTPLGPHQPLPIQPTLTATSKSTHLTLAKQSEKYLQGRDQSSLVPPLPAPETPVSSISFHESSSNSTSPSPALISCTTSTSTSTSTSTSFSFWKNYLTRAVSGSLWAETQKSGEASKAPEIDMSELESLFSAAAPKSDHGNSSGKSNLRAPAGSKFDKVQLIEHRRAYNCEIMLSKVKVPLHELMNSVLALEDSALDVDQVDNLIKFCPTKDEIELLKGYKGEKEKLGKCEQFLLELMQVPRVETKLRVFSFKIQFPSLVSYLRTSLNVVNSAAEEASYSPIKNSLKLKRIMQTILQLGNALNQGTSRGSAIGFRLDSLLKIADTRARNKKTTLMHYLCKVLADKLPEVLDFSKDLASLEPASKIQLKFLAEEMQAISKGLEKVMQELSSSENDGPISENFCKTLKKFLHFAETEVRSLASLYSGVGRNVDALILYFGEDPARCPF* 948
       

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11randomg8 947 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 147 284 IPR035892 -
Vvi11randomg8 947 ProSiteProfiles Formin homology-2 (FH2) domain profile. 579 947 IPR015425 -
Vvi11randomg8 947 SMART it6_source 350 946 IPR015425 -
Vvi11randomg8 947 MobiDBLite consensus disorder prediction 415 449 - -
Vvi11randomg8 947 Pfam C2 domain of PTEN tumour-suppressor protein 146 282 IPR014020 -
Vvi11randomg8 947 MobiDBLite consensus disorder prediction 484 516 - -
Vvi11randomg8 947 ProSiteProfiles C2 tensin-type domain profile. 145 284 IPR014020 -
Vvi11randomg8 947 MobiDBLite consensus disorder prediction 458 472 - -
Vvi11randomg8 947 Pfam Formin Homology 2 Domain 583 945 IPR015425 -
Vvi11randomg8 947 SMART PTEN_C2_2 143 283 IPR014020 -
Vvi11randomg8 947 MobiDBLite consensus disorder prediction 556 589 - -
Vvi11randomg8 947 MobiDBLite consensus disorder prediction 395 472 - -
Vvi11randomg8 947 Gene3D Protein tyrosine phosphatase superfamily 53 138 IPR029021 -
Vvi11randomg8 947 MobiDBLite consensus disorder prediction 533 589 - -
Vvi11randomg8 947 Gene3D Formin, FH2 domain 599 947 IPR042201 -
Vvi11randomg8 947 SUPERFAMILY Formin homology 2 domain (FH2 domain) 658 946 - -
Vvi11randomg8 947 Coils Coil 868 888 - -
Vvi11randomg8 947 Gene3D - 142 287 - -
Vvi11randomg8 947 PANTHER FORMIN-J 1 943 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11randomg8 - - - vvi:100249846 993.801
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g937 . 412 832 FH2 protein (formin) Gene Family AT3G25500 64.9 9.2e-144 508.4
Vvi14g193 . 78 464 FH2 protein (formin) Gene Family AT3G25500 51.1 1.3e-102 371.7
Vvi7g937 . 397 844 FH2 protein (formin) Gene Family AT2G43800 55.6 5.4e-129 459.1
Vvi5g1358 . 92 643 FH2 protein (formin) Gene Family AT2G43800 51.7 6.6e-127 452.2
Vvi12g553 ECH 202 356 FH2 protein (formin) Gene Family AT4G15200 69.6 2.1e-55 213.8
Vvi19g414 ECH 34 173 FH2 protein (formin) Gene Family AT4G15200 71.1 1.5e-50 197.6
Vvi19g414 ECH 29 497 FH2 protein (formin) Gene Family AT5G54650 68.0 2.3e-175 613.2
Vvi12g553 ECH 210 626 FH2 protein (formin) Gene Family AT5G54650 60.4 6.4e-146 515.4
Vvi5g1358 . 390 649 FH2 protein (formin) Gene Family AT5G54650 58.5 2.2e-77 287.7
Vvi7g937 . 26 851 FH2 protein (formin) Gene Family AT5G67470 57.9 1.8e-228 789.6
Vvi14g193 . 80 452 FH2 protein (formin) Gene Family AT5G67470 50.8 3.1e-100 363.6
Vvi5g1358 . 384 647 FH2 protein (formin) Gene Family AT5G67470 70.5 2.0e-99 360.9
Vvi1g795 ECH 233 723 FH2 protein (formin) Gene Family AT1G59910 53.6 4.9e-133 472.6
Vvi14g1506 ECH 264 750 FH2 protein (formin) Gene Family AT1G59910 52.3 1.1e-127 454.9
Vvi17g677 ECH 415 870 FH2 protein (formin) Gene Family AT1G59910 52.4 7.4e-121 432.2
Vvi1g795 ECH 111 721 FH2 protein (formin) Gene Family AT1G70140 51.5 2.7e-161 566.2
Vvi17g677 ECH 412 868 FH2 protein (formin) Gene Family AT1G70140 55.5 9.3e-138 488.0
Vvi7g937 . 433 809 FH2 protein (formin) Gene Family AT5G48360 50.1 8.2e-89 325.5
Vvi14g193 . 66 467 FH2 protein (formin) Gene Family AT3G05470 67.3 4.8e-162 568.9
Vvi7g937 . 409 808 FH2 protein (formin) Gene Family AT3G05470 50.7 1.0e-103 375.2
Vvi5g1358 . 354 651 FH2 protein (formin) Gene Family AT3G05470 53.4 8.1e-77 285.8
Vvi2g901 . 1 1078 FH2 protein (formin) Gene Family AT1G31810 58.0 0.0e+00 1228.4
Vvi17g592 . 679 1000 FH2 protein (formin) Gene Family AT5G07650 75.2 4.3e-130 462.6
Vvi2g901 . 724 1054 FH2 protein (formin) Gene Family AT5G07650 61.0 1.5e-109 394.4
Vvi4g572 . 1246 1548 FH2 protein (formin) Gene Family AT5G07650 63.7 4.5e-103 372.9
Vvi11randomg8 . 663 947 FH2 protein (formin) Gene Family AT5G07650 60.0 9.8e-90 328.6
Vvi17g592 . 602 993 FH2 protein (formin) Gene Family AT5G07770 68.2 5.0e-139 491.9
Vvi2g901 . 659 1049 FH2 protein (formin) Gene Family AT5G07770 56.1 7.7e-116 414.8
Vvi4g572 . 1232 1541 FH2 protein (formin) Gene Family AT5G07770 61.3 1.1e-96 351.3
Vvi11randomg8 . 598 947 FH2 protein (formin) Gene Family AT5G07770 53.8 3.0e-91 333.2
Vvi17g592 . 602 1000 FH2 protein (formin) Gene Family AT3G32400 66.3 8.7e-145 510.8
Vvi2g901 . 659 1054 FH2 protein (formin) Gene Family AT3G32400 65.0 3.2e-139 492.3
Vvi4g572 . 1251 1548 FH2 protein (formin) Gene Family AT3G32400 78.5 2.2e-127 453.0
Vvi11randomg8 . 598 947 FH2 protein (formin) Gene Family AT3G32400 68.6 2.0e-125 446.4
Vvi17g592 . 603 1000 FH2 protein (formin) Gene Family AT5G07780 63.4 3.0e-123 439.1
Vvi2g901 . 660 1050 FH2 protein (formin) Gene Family AT5G07780 52.9 3.8e-102 369.0
Vvi4g572 . 1251 1548 FH2 protein (formin) Gene Family AT5G07780 61.5 2.2e-89 326.6
Vvi17g592 . 678 1007 FH2 protein (formin) Gene Family AT5G07760 73.2 8.4e-127 451.8
Vvi2g901 . 734 1050 FH2 protein (formin) Gene Family AT5G07760 62.9 3.0e-108 390.2
Vvi4g572 . 1251 1548 FH2 protein (formin) Gene Family AT5G07760 65.9 2.9e-103 373.6
Vvi11randomg8 . 662 947 FH2 protein (formin) Gene Family AT5G07760 60.8 1.3e-90 331.6