Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1039 ATGGGCAACGGCAGCAACTTCAGCTGGGCTTTGAGCCTGCTGACGACTCTCTGTCTCCTCTCTGTCTCCGCCACCACCGCTCTCTCTCAATCCTCCAACGCCTCCGCATGTCCCATGGACTTCAACTACGTTCTCAGAATCTCATGGAACTCCTCAAACTGCCACAACTTCGTCTCACAGGGCAACACCAGCGTCAACAGCAAAAGCTCATGTTGCACAACTCTCCTCAGCCTCTTTGCAGTCTCACTCGCTCAACACCTCAAAGAGACCTCCCTCTTTAATCTCCCGGACGTCTCCACCTCCCAATCCTGTCTCCACGATTTTCAATCCAAGCTCACCTCTCTCCCCCTGGCCAACAACCTCGCCTCTTCTTGCTTTGATCCTCAGCAGTTCGTGATTGGACCTGACATATGTGCCGGTGTGCAGAACATCTCCGACTGGGCTGGGCCTGAGAGTACTGGCGCAATGTCGTGTGTACTCGCAGTACCTTTGAATTCTGATGAGGGGTCTAGTAGTAAGAGCCATTCGGCTCTGATTTTTGGGTTTACAGGGGCGGGTGTTGCTGTATTGGTGATGTCCTGCTTGTTGGGGCTGTACTTTTGGTGGGAGAGGAAGTGGGGGAAGAAGAGTAAGAGGAGTGGTTCAGGGTTTTTCGGAGTGGATTTGGAGGATTTGGGAGGGTCTAGGCCGCGGGTTAGGCCGAATACTGGTTCAATCTGGTTCAAAATTCCGGACCTTGAGAGGGCAACCGACAATTTTTCGCAGAAGAATTTCATTGGGCGAGGGGGGTTTGGTCTTGTTTACAAGGGGACTTTAGCAGATGGGAGCACTGTTGCAGTCAAGAAGATTATAGAGTCCGATATTCAGGTTGATGCAGACTTTTGTAATGAGATTGAGATCATTAGCAATTTGAAGCATCGGAATCTCGTTCCCCTTAGAGGTTGTTGTGTGGTTGATGGAGGTGAGGGTTATGATGACAGGGCAAGCCCGAGGTACCTTGTTTATGATTACATGCCAAATGGGAATCTTGATGACCATTTCAGAGAAGGGCAGTCTCATCTCACTACTAGAGTGGCCGGTACTCATGGGTACCTAGCCCCAGAGTATGCCCTCTATGGACAGCTGACTGAGAAGAGCGATGTTTATAGCTTTGGGGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTGTCATCAAGATCGCCTCGGGCATTTTTGATAACGGATTGGGCTTGGTCAATGGTGAAAGCTGGGAAAGCAGAAGAGGCTTTAGATGCTTCTTTGGTGAAAGATGGGGATTCATCAAATTCAAACCCAAAGGCGATAATGGAGAGATTTTTGCTGGTTGGGATTTTGTGTGCTCATGTTATGGTGGCTCTCAGGCCTACCATTTCAGATGCACTGAAAATGCTCGAAGGCGATGTTGAGGTTCCTGCCATTCCTGATAGGCCAGTGCCTCTTGGGCACCCTTCGTTTCTCACTGATGGGAATACGTTTAGCATATCACCAGCATTGAGCGGACCTAAATTACACACAGGAGACATGCTCAGGGAAGGACGTTTTAGAGGACAGCTGCAGGCTTGA 1593 49.53 MGNGSNFSWALSLLTTLCLLSVSATTALSQSSNASACPMDFNYVLRISWNSSNCHNFVSQGNTSVNSKSSCCTTLLSLFAVSLAQHLKETSLFNLPDVSTSQSCLHDFQSKLTSLPLANNLASSCFDPQQFVIGPDICAGVQNISDWAGPESTGAMSCVLAVPLNSDEGSSSKSHSALIFGFTGAGVAVLVMSCLLGLYFWWERKWGKKSKRSGSGFFGVDLEDLGGSRPRVRPNTGSIWFKIPDLERATDNFSQKNFIGRGGFGLVYKGTLADGSTVAVKKIIESDIQVDADFCNEIEIISNLKHRNLVPLRGCCVVDGGEGYDDRASPRYLVYDYMPNGNLDDHFREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSRSPRAFLITDWAWSMVKAGKAEEALDASLVKDGDSSNSNPKAIMERFLLVGILCAHVMVALRPTISDALKMLEGDVEVPAIPDRPVPLGHPSFLTDGNTFSISPALSGPKLHTGDMLREGRFRGQLQA* 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18567608 18570935 + Vvi12g1039 Vvi12g1039 773562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1039 530 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 149 348 - -
Vvi12g1039 530 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 349 520 - -
Vvi12g1039 530 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 27 148 - -
Vvi12g1039 530 SUPERFAMILY Protein kinase-like (PK-like) 237 506 IPR011009 -
Vvi12g1039 530 Gene3D Transferase(Phosphotransferase) domain 1 338 487 - -
Vvi12g1039 530 Pfam SPARK 32 148 IPR043891 -
Vvi12g1039 530 ProSitePatterns Protein kinases ATP-binding region signature. 259 282 IPR017441 GO:0005524
Vvi12g1039 530 Gene3D Phosphorylase Kinase; domain 1 230 337 - -
Vvi12g1039 530 Pfam Protein tyrosine and serine/threonine kinase 256 355 IPR001245 GO:0004672|GO:0006468
Vvi12g1039 530 Pfam Protein tyrosine and serine/threonine kinase 364 396 IPR001245 GO:0004672|GO:0006468
Vvi12g1039 530 ProSiteProfiles Protein kinase domain profile. 253 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1039 530 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 349 520 - -
Vvi12g1039 530 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 148 - -
Vvi12g1039 530 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 149 348 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76082 PF19160 SPARK 1.40E-22 No_clan Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1039 - - sind:105172558 530.02