Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1041 ATGAAAGTTCCTCATCAGCTCTACAGTCTGTACTCAGCCTCCAACATGATCAAGAGGGAAGATCATAGCCGGAAAAGTCTGAAAAAGCCAGAAGAAAAGCAGCATGATGACTCCAAACCTTTCAACTCCCGGAATCTGTCAAAGGTCATTCTCCCTCCCTTAGGTGTCTCAAGTTATAACCAAAATCCGTTAGCGCCCAAAGGATGGATCATCTCACCAATGGATTCAAGATACAGGTGTTGGGAGACATTTATGGTGGTTTTAGTAGCCTACTCTCTATGGATTTACCCTTTTCAAGTTGCATTTCTGAAAGCCTCTCCAAATAGACAACTATATATCACGGATAATGTCGTTGATCTATTTTTCGCTGTTGACATCGTCTTAACATTTTTTGTCGCTTACATTGATCGAAGAACTCAGCTACTTGTTTGTGACTGGAGAAAGATTGCAGTGAGGTACCTGTCAACATGGTTTCTGATGGATATGGCATCAACTATGCCTTTTGAGGCACTGGGCTCCTTGATCACTGGCAAACAGAAAGTGGGTCTCTCCTACTCCCTCTTGGGTCTGCTCAGATTCTGGCGTCTCCGCCGTGTCAAGCAACTCTTCACCAGGCTTGAGAAGGACATCAGATTCAGCTATTTCTGGGTTCGATGTGCTAGGCTATTATCAGTGACATTGTTTCTGGTCCACTGTGCTGGGTGCCTATACTACTTGCTAGCTGATCGATACCCGCATCAAGGAAAGACGTGGATTGGAGCCGTTATACCGAATTTTAGAGAGACAAGCCTTTGGATCAGATATATTTCAGCCCTGTATTGGTCCATCACCACCATGACCACTGTTGGCTATGGTGACATGCATGCTGTGAACACTATGGAGATGATCTTCATCATTTTCTACATGCTATTCAACCTTGGCTTAACTGCTTACTTGATCGGTAACATGACAAACTTAGTTGTTGAAGGCACTAGACGTACTATGGAATTTAGAAATAGCATAGAAGCAGCATCAAACTTTGTATGCAGAAACCGGTTGCCTCCAAGATTGAAAGAGCAGATACTGGCTTATATGTGTTTGAGATTTAAGGCTGAGAGCTTGAATCAGCACCAACTAATTGAACAGCTGCCCAAATCCATATGCAAAAGCATCTGCCAGCATTTATTCTTGCCAACTGTGGAGAAGGTCTATCTTTTCAAGGGAATCTCAAGAGAAATACTCTTGCTCCTGGTTGCAAAGATGAAGGCTGAGTACATACCTCCTAGAGAAGATGTTATAATGCAGAATGAGGCGCCAGATGACGTTTACATAATTGTATCTGGAGAAGTTGAAATTATTGATTATGAGGGAGAGAAAGAGCATGTTGTTGGGACTCTACAGTCTGCAGACATGTTTGGAGAAGTTGGGGCACTTTGCTGCAGACCTCAAACCTATACGTTCCGAACCAAGACCCTTTCACAACTCCTGAGGCTGAAGACCAGTGCACTGATAGAAGCAATGCAGACTAAGAAGGAAGACAATGTGATTATCCTTAAAAACTTTCTTCAGCATCACAAAAGGCTTAAGGATCTAAACATTGGAGATTTGCTGGTGGAGAATGGGGAAGAAGATGTTAACCCCAACATGGCTTTCAATTTACTGACTGTTGCCAGCACTGGCAACGCAGCCTTTCTTGATGAGCTTCTCAAGGCAAAATTGGACCCTGATATTGGGGACTCCAAAGGAAGAACCCCATTGCACATAGCAGCATCAAAAGGGCATGAAGATTGTGTAATGGTACTTCTCAAACATGCGTGCAATGTACATGTCCGAGATATAAATGGCAACACTGCATTATGGGATGCTGTATCTGCAAAACACAATTCTATATTCTGGATCCTATATCACTGTGCTTCCCTTTCAGATCCCTACACTTCTGGTGATCTTTTGTGCACTGCTGCAAAGAGAAATGACCTAACAGCGATGAAGGAGCTCCTGAAACAAGGTTTAAACATAGACTCGAAGAATCGCCAAGGGTTAACAGCAATCCAGATTGCCATGGCAGAAGACCACACAGATATGGTAAAGCTACTTGTAATGAATGGCGCAGATGTTATCCATGCCAATACCTATGAGGACCAAGGAGGAGAAAAGGAGTTTAATACTAATGGAGGATTCAAAGGAACAAATGTTCCAAGGGTGAGCATATATAGAGGCCATCCTCTGCAGAGAAAAGAGAGCTGCTGCACTGAAGCTGGCCGGCTGATTAGGTTGCCAAACTCATTAATGGAGCTCAAGGCCATTGCAGGTGAGAAGCTTGGATTTGATGCAAGAAATGCAATGGTAACGAACGAAGAAGGAGCAGAAATCGACTCCATTGAAGTTATTAGAGACAATGATACGCTTTTCCTAGTTGAAGATCCAAACTCCCTGATGTAA 2418 43.26 MKVPHQLYSLYSASNMIKREDHSRKSLKKPEEKQHDDSKPFNSRNLSKVILPPLGVSSYNQNPLAPKGWIISPMDSRYRCWETFMVVLVAYSLWIYPFQVAFLKASPNRQLYITDNVVDLFFAVDIVLTFFVAYIDRRTQLLVCDWRKIAVRYLSTWFLMDMASTMPFEALGSLITGKQKVGLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWVRCARLLSVTLFLVHCAGCLYYLLADRYPHQGKTWIGAVIPNFRETSLWIRYISALYWSITTMTTVGYGDMHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLPTVEKVYLFKGISREILLLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIDYEGEKEHVVGTLQSADMFGEVGALCCRPQTYTFRTKTLSQLLRLKTSALIEAMQTKKEDNVIILKNFLQHHKRLKDLNIGDLLVENGEEDVNPNMAFNLLTVASTGNAAFLDELLKAKLDPDIGDSKGRTPLHIAASKGHEDCVMVLLKHACNVHVRDINGNTALWDAVSAKHNSIFWILYHCASLSDPYTSGDLLCTAAKRNDLTAMKELLKQGLNIDSKNRQGLTAIQIAMAEDHTDMVKLLVMNGADVIHANTYEDQGGEKEFNTNGGFKGTNVPRVSIYRGHPLQRKESCCTEAGRLIRLPNSLMELKAIAGEKLGFDARNAMVTNEEGAEIDSIEVIRDNDTLFLVEDPNSLM* 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18663942 18670736 + Vvi12g1041 Vvi12g1041 773564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1041 805 MobiDBLite consensus disorder prediction 19 42 - -
Vvi12g1041 805 Pfam Cyclic nucleotide-binding domain 418 502 IPR000595 -
Vvi12g1041 805 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Vvi12g1041 805 PANTHER POTASSIUM CHANNEL AKT1 724 805 IPR045319 GO:0005249|GO:0006813
Vvi12g1041 805 PANTHER POTASSIUM CHANNEL AKT1 43 699 IPR045319 GO:0005249|GO:0006813
Vvi12g1041 805 ProSiteProfiles cAMP/cGMP binding motif profile. 398 517 IPR000595 -
Vvi12g1041 805 ProSiteProfiles KHA domain profile. 726 805 IPR021789 -
Vvi12g1041 805 SMART cnmp_10 398 515 IPR000595 -
Vvi12g1041 805 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 724 805 - -
Vvi12g1041 805 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 43 699 - -
Vvi12g1041 805 Pfam Ankyrin repeats (3 copies) 642 698 IPR002110 GO:0005515
Vvi12g1041 805 Pfam Ankyrin repeats (3 copies) 550 629 IPR002110 GO:0005515
Vvi12g1041 805 SMART ANK_2a 491 526 IPR002110 GO:0005515
Vvi12g1041 805 SMART ANK_2a 671 701 IPR002110 GO:0005515
Vvi12g1041 805 SMART ANK_2a 607 635 IPR002110 GO:0005515
Vvi12g1041 805 SMART ANK_2a 542 570 IPR002110 GO:0005515
Vvi12g1041 805 SMART ANK_2a 638 667 IPR002110 GO:0005515
Vvi12g1041 805 SMART ANK_2a 574 603 IPR002110 GO:0005515
Vvi12g1041 805 Pfam Ion transport protein 79 327 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi12g1041 805 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Vvi12g1041 805 SUPERFAMILY cAMP-binding domain-like 325 516 IPR018490 -
Vvi12g1041 805 Gene3D - 79 321 - -
Vvi12g1041 805 ProSiteProfiles Ankyrin repeat region circular profile. 574 605 - -
Vvi12g1041 805 Gene3D - 543 709 IPR036770 -
Vvi12g1041 805 MobiDBLite consensus disorder prediction 19 45 - -
Vvi12g1041 805 PRINTS Ankyrin repeat signature 575 590 IPR002110 GO:0005515
Vvi12g1041 805 PRINTS Ankyrin repeat signature 687 701 IPR002110 GO:0005515
Vvi12g1041 805 CDD CAP_ED 398 511 IPR000595 -
Vvi12g1041 805 SUPERFAMILY Voltage-gated potassium channels 73 321 - -
Vvi12g1041 805 Gene3D Jelly Rolls 365 527 IPR014710 -
Vvi12g1041 805 Pfam KHA, dimerisation domain of potassium ion channel 725 797 IPR021789 -
Vvi12g1041 805 PRINTS EAG/ELK/ERG potassium channel family signature 115 125 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi12g1041 805 PRINTS EAG/ELK/ERG potassium channel family signature 126 135 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi12g1041 805 PRINTS EAG/ELK/ERG potassium channel family signature 268 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi12g1041 805 PRINTS EAG/ELK/ERG potassium channel family signature 294 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi12g1041 805 PRINTS EAG/ELK/ERG potassium channel family signature 312 321 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi12g1041 805 SUPERFAMILY Ankyrin repeat 513 703 IPR036770 -
Vvi12g1041 805 ProSiteProfiles Ankyrin repeat region circular profile. 671 698 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1041 K21867 - vvi:100261806 1599.72