Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1063 ATGGAGACGAAGCCTTCAGTGAAAGGCAATTTGCTAGGCCGAGGACGCCATGGCAGGGTTTACTCAGCCTTCTCCTTCAACCACACTCCTCACCATCTCGCTGTCAAATCCGCATTTTCTTCGCATTCATCTTTACTTGCCAAGGAGAAACGCATCCTTTCCGAACTCCAACACTGCCCGGAGATTGTTCACTGTTATGGAGACGATTCCACCATGGAAGAGGGCGTGGAGACTTACAACTTATTCCTCGAGTATGCCCCAGGAGGAAGTCTATCAGACTTGATTCGCAACAGTGGAGGCACGTTGCCGGAATCCAACGTCCAACTCTACACCAGAATGATACTCAAGGGTCTCTGTCACATCCATGAAAAAGGGTACGTACACTGCGATATCAAGCCCAGTAACATGCTTATTTTTCCGTTGGAAGATGGTGGGAACAAGGTTAAGATTGCGGATTTCGGATTGGCGAAAAGGATCGGAGAAGAGAGAGCTCTACAGCTGCCTCAGTTCAGCGGGACGCCGGCTTACATGTCGCCGGAGTCGGTTCTTTACGGTGAAGACGAGCCACCCTTGGATGTATGGTCTCTGGGTATTACTGTGGTGGAGATGCTTACTGGGAAACTGGTTTGGAGGAGGTTAGGAAAGGAGGACCTGCTGTTCAGTATAGTTTTCGGAGAGCCTGAAATCCCAGAAAGCGTATCGGAAGAGGGGAAGGATTTTCTGAGGATGTGTTTCAGAAGGGAGGCTAAAGAGAGATGGACAGCGAGAATGCTGCTGAACCACCCTTTCACTACTGAAGAACCCTCGTCCATGGCTATGGAAACAAGCCATTTTGATTGGAGTCGGTTGAAGTTGCGGGATCCACTGGCGTCAACTGGCTCGTCTTCTTCTCCGAGGTCGCGTTCTAATTCTTTCTTCAATCGGTTTTGCTCTTCAATGCAGTCTCTTTTTAAGATTTCCTTGGTTCTTTTTCATACATATTTGGGTTGA 990 48.69 METKPSVKGNLLGRGRHGRVYSAFSFNHTPHHLAVKSAFSSHSSLLAKEKRILSELQHCPEIVHCYGDDSTMEEGVETYNLFLEYAPGGSLSDLIRNSGGTLPESNVQLYTRMILKGLCHIHEKGYVHCDIKPSNMLIFPLEDGGNKVKIADFGLAKRIGEERALQLPQFSGTPAYMSPESVLYGEDEPPLDVWSLGITVVEMLTGKLVWRRLGKEDLLFSIVFGEPEIPESVSEEGKDFLRMCFRREAKERWTARMLLNHPFTTEEPSSMAMETSHFDWSRLKLRDPLASTGSSSSPRSRSNSFFNRFCSSMQSLFKISLVLFHTYLG* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19006953 19007943 - Vvi12g1063 Vvi12g1063 773586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1063 329 ProSiteProfiles Protein kinase domain profile. 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1063 329 SMART serkin_6 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1063 329 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1063 329 SUPERFAMILY Protein kinase-like (PK-like) 9 303 IPR011009 -
Vvi12g1063 329 Gene3D Transferase(Phosphotransferase) domain 1 5 310 - -
Vvi12g1063 329 CDD STKc_MAPKKK 7 263 - -
Vvi12g1063 329 ProSitePatterns Protein kinases ATP-binding region signature. 12 36 IPR017441 GO:0005524
Vvi12g1063 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vvi12g1063 329 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 7 289 - -
Vvi12g1063 329 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 7 289 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76083 PF00069 Pkinase 3.40E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1063 - - vvi:100258353 654.825