Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1064 ATGCGGTTCGACCGGTGCGGGCAGTCGGAGTTGCTGGAATGTGATAAGAGCACGATCATCAGGCGGGCGGCGATTCCGGCAAGGGATTTGAGAATTCTCGGCCCTGTCTTCTCTCATTCCTCTAATATTCTTGCTAGGGAAAAGGCCATGGTTGTCAATCTAGAGTTCATAAAGGCTATAGTTACAGCTGAAGAAGTGTTGTTGCTAGATCCTCTTCGACAGGAGGTTCTTCCATTTGTGGATCAGCTAAGACAACAACTTCCTCATAAAAGCCCATTTAGAATGCATGGGGCAAGCCCTCTGGATACACAAGAGAATGAAATGCAGTTTTCGACAGGTGGTCGTTGGTTACCTGTTCCTGACTCTGAAGGGTTGCAGAATGAGCTTCCCTTTGAGTTTCAGGTTCTGGAGATTGCATTAGAGGTTGTCTGTACATATCTTGACACCAATGTGGCAGAACTGGAGAGAGATGCTTACCCTGTCCTGGATGAGCTGGCCAGGAACGTTAGCACCAAGAATCTTGAACATGTCCGGAGTTTAAAAAGCAATCTTACACGTCTTCTCGCCCGAGTGCAAAAGGTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGATTTATACTTAACAAGGAAGTGGATCCAGAATCAGCAAAATGAGGCTTTGTTGGGAGCTGCAGTATCCAATAGTCTCATCACTCCGGCACCCTATCTTCCAAGACTCAGTTCTCACAGGAGTGTGAGTTTGGCAACTAGCAACTTTGTGGATGATGATGATGTGGAGGATCTGGAGATGTTGCTTGAGGCATACTTCATGCAGCTGGACGGGACTCGTAACAAGATATTGTCTGTTCGGGAGTATATTGATGACACAGAAGACTATGTTAACATCCAACTGGACAACCAGCGAAACGAACTCATTCAACTCCAATTGACCTTGACCATTGCATCATTTGCTATAGCCGTTGAAACTCTGATTGCTGGATTATTTGGTATGAACATCCCTTGTCCATTATACGAAATGCATGGGGTCTTCAACCCCTTCGTTGGATGTGTCACAGCTGGTTGTATATTGCTATTCCTGCTTGTTCTCGGGTACGCCAGATGGAAGAAGCTGCTGGGTTCATGA 1140 46.05 MRFDRCGQSELLECDKSTIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVLPFVDQLRQQLPHKSPFRMHGASPLDTQENEMQFSTGGRWLPVPDSEGLQNELPFEFQVLEIALEVVCTYLDTNVAELERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDELEHLLDDNEDMADLYLTRKWIQNQQNEALLGAAVSNSLITPAPYLPRLSSHRSVSLATSNFVDDDDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIAVETLIAGLFGMNIPCPLYEMHGVFNPFVGCVTAGCILLFLLVLGYARWKKLLGS* 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19013269 19023977 + Vvi12g1064 Vvi12g1064 773587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1064 379 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 379 IPR039204 -
Vvi12g1064 379 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 315 366 IPR045863 -
Vvi12g1064 379 CDD Mrs2_Mfm1p-like 1 376 IPR039204 -
Vvi12g1064 379 Gene3D Magnesium transport protein CorA, transmembrane region 317 377 - -
Vvi12g1064 379 Gene3D - 1 71 - -
Vvi12g1064 379 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 1 379 - -
Vvi12g1064 379 Coils Coil 177 211 - -
Vvi12g1064 379 Gene3D Magnesium transport protein CorA, transmembrane region 74 310 - -
Vvi12g1064 379 Pfam CorA-like Mg2+ transporter protein 267 370 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1064 K16075 - vvi:100246349 732.635