Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1066 ATGCAATTTTTGCATCTCATTATACAAAGAAATGAGTTTTGTCTTATAGGTACACTCCATAAACTCAATTTTTCATCACTTTCCAACCTCCTTACTCTTAATCTTTATAACAACTCCCTCTATGGAACCATTCCAATCAACATTGGCAATCTTTCCAAACTGATCATAAATCTTGACTTGGCAAACAACAATCTTAGCGGTTCAATACCAGCTTCCTTAGGAAACTTGTCCAAGTTAAGCCTTTTATATCTTTATGGTAACAAACTTTCTGGATTCATCCCTCAAGAATTTGAGTTACTAAGATCTCTTATAGTTCTTGAATTGCTTAATATTCTTGACTTATCATTTAACAATCTCAGTGGTTCAATACCAGCTTCTATAGGAAACTTGTCCAGCTTAACCACTTTGGCTCTTCATTCCAACAAACTCAGTGGTGCCATTCCCCGAGAAATGAATAATGTCACTCATTTGAAATCTTTGCAGATAGGTGAGAATAACTTCATTGGCCACCTACCACAAGAGATATGCCTTGGTAATGCTCTTGAAAAAGTTTCAGCCGCAAGGAACCATTTCACTGGTCCTATTCCAAAGAGCTTGAAAAATTGCACTAGCTTATTCAGAGTTAGGCTTGAAAAAAACCAACTTACTGGAGACATAGCCGAAAGTTTTGGTGTATACCCTAATCTAAATTATATTGATCTGAGCAATAACAATTTTTATGGTGAGCTTTCTGAGAAATGGGGGGAGTGCCACATGCTCACAAACCTGAACATCTCCAATAACAAAATTTCTGGTGCTATACCACCTCAACTTGGGAAAGCAATTCAACTGCAACAACTTGATCTCTCCTCAAATCATCTAATTGGGAAGATCCCAAAAGAATTGGGTATGCTTCCTTTACTGTTCAAGCTGTTGCTAGGCAACAACAAACTTTCAGGAAGTATTCCTCTGGAATTGGGAAACTTATCCGATCTTGAAATCCTTGACTTGGCATCAAACAACTTAAGCGGAGAGATGCCACCGCGGCTTGGAGAATTACAGAACCTGGAAACGTTGAATCTCTCCCACAACGGGCTATCTGGCACCATTCCACACACGTTTGATGATTTGAGAAGTTTGACAGTTGCTGATATATCCTACAATCAATTGGAAGGTCCTCTCCCCAACATCAATGCCTTTGCTCCATTTGAGGCATTCAAAAATAATAAAGGTCTGTGTGATCTATTTGCAATATGGGGCCATGATGGGGAATTGCTGTATGAACACATCATACAGGGGACCGACAATTTCAGTTCGAAGCAGTGTATTGGCACTGGAGGATATGGTACTGTTTACAAGGCTGAGTTGCCAACAGGTCGGGTTGTTGCTGTGAAAAAGCTTCACTCATCACAAGATGGAGATATGGCTGATTTGAAAGCTTTCAAAAGCGAGATTCATGCTTTAACACAGATAAGGCATCGCAATATCGTCAAGCTTTATGGCTTCAGTTTATTTGCAGAGAACTCATTTTTGGTTTATGAGTTTATGGAAAAGGGAAGCTTGCGAAGCATTCTAAGAAACGACGAAGAAGCAGAAAAATTAGATTGGATTGTGAGGCTAAACGTTGTTAAAGGCGTGGCTAAAGCTTTATCTTATATGCACCATGATTGCTCACCTCCTATAATTCATCGAGACATATCAAGTAACAATGTTTTGTTAGATTCAGAATATGAAGCTCATGTATCTGACTTTGGCACAGCTAGGCTTTTAAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACTGCTCCAGAACTTGCATACTCAATGAAGGTGGATTATAAAACCGATGTTTATAGTTACGGTGTTGTAACATTGGAAGTAATTATGGGGAGGCATCCTGGAGAACTCATCTCATCCCTGTTATCATCAGCGTCCTCCTCATCTACATCACCATCAACTGCCGACCATTTCCTGTTGAATGATGTGATAGACCAGCGCCCCTCACCTCCTGTGAATCAAGTGGCAAAGGAAGTAGAGGTTGCAGTGAAGTTGGCATTTGCATGCTTGCGTGTTAATCCCCAATCTCGGCCAACTATGCAACAAGTTGCTCGAGCACTCTCAACACAGTGGCCACCATTGTCGAAACCGTTTTCCATGATTACATTGCTTGAGCTGCAGGATCATGGTCATGGGGGTGAAACTAGCTGA 2205 40.32 MQFLHLIIQRNEFCLIGTLHKLNFSSLSNLLTLNLYNNSLYGTIPINIGNLSKLIINLDLANNNLSGSIPASLGNLSKLSLLYLYGNKLSGFIPQEFELLRSLIVLELLNILDLSFNNLSGSIPASIGNLSSLTTLALHSNKLSGAIPREMNNVTHLKSLQIGENNFIGHLPQEICLGNALEKVSAARNHFTGPIPKSLKNCTSLFRVRLEKNQLTGDIAESFGVYPNLNYIDLSNNNFYGELSEKWGECHMLTNLNISNNKISGAIPPQLGKAIQLQQLDLSSNHLIGKIPKELGMLPLLFKLLLGNNKLSGSIPLELGNLSDLEILDLASNNLSGEMPPRLGELQNLETLNLSHNGLSGTIPHTFDDLRSLTVADISYNQLEGPLPNINAFAPFEAFKNNKGLCDLFAIWGHDGELLYEHIIQGTDNFSSKQCIGTGGYGTVYKAELPTGRVVAVKKLHSSQDGDMADLKAFKSEIHALTQIRHRNIVKLYGFSLFAENSFLVYEFMEKGSLRSILRNDEEAEKLDWIVRLNVVKGVAKALSYMHHDCSPPIIHRDISSNNVLLDSEYEAHVSDFGTARLLKSDSSNWTSFAGTFGYTAPELAYSMKVDYKTDVYSYGVVTLEVIMGRHPGELISSLLSSASSSSTSPSTADHFLLNDVIDQRPSPPVNQVAKEVEVAVKLAFACLRVNPQSRPTMQQVARALSTQWPPLSKPFSMITLLELQDHGHGGETS* 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19038287 19052599 - Vvi12g1066 Vvi12g1066 773589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1066 734 SUPERFAMILY RNI-like 33 389 - -
Vvi12g1066 734 Gene3D Phosphorylase Kinase; domain 1 407 508 - -
Vvi12g1066 734 SUPERFAMILY Protein kinase-like (PK-like) 414 705 IPR011009 -
Vvi12g1066 734 ProSitePatterns Protein kinases ATP-binding region signature. 436 459 IPR017441 GO:0005524
Vvi12g1066 734 Gene3D Ribonuclease Inhibitor 4 110 IPR032675 -
Vvi12g1066 734 Pfam Protein kinase domain 431 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1066 734 Gene3D Ribonuclease Inhibitor 111 406 IPR032675 -
Vvi12g1066 734 ProSitePatterns Tyrosine protein kinases specific active-site signature. 554 566 IPR008266 GO:0004672|GO:0006468
Vvi12g1066 734 CDD STKc_IRAK 436 705 - -
Vvi12g1066 734 Pfam Leucine rich repeat 325 383 IPR001611 GO:0005515
Vvi12g1066 734 SMART LRR_typ_2 27 51 IPR003591 -
Vvi12g1066 734 SMART LRR_typ_2 106 130 IPR003591 -
Vvi12g1066 734 SMART LRR_typ_2 76 99 IPR003591 -
Vvi12g1066 734 SMART LRR_typ_2 154 178 IPR003591 -
Vvi12g1066 734 SMART LRR_typ_2 346 369 IPR003591 -
Vvi12g1066 734 Gene3D Transferase(Phosphotransferase) domain 1 509 710 - -
Vvi12g1066 734 PRINTS Leucine-rich repeat signature 109 122 - -
Vvi12g1066 734 PRINTS Leucine-rich repeat signature 346 359 - -
Vvi12g1066 734 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 109 349 - -
Vvi12g1066 734 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 407 724 - -
Vvi12g1066 734 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 304 407 - -
Vvi12g1066 734 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 25 124 - -
Vvi12g1066 734 ProSiteProfiles Protein kinase domain profile. 430 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1066 734 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 109 349 - -
Vvi12g1066 734 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 304 407 - -
Vvi12g1066 734 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 25 124 - -
Vvi12g1066 734 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 407 724 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76084 PF00069 Pkinase 3.00E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1066 - - vri:117928266 781.171