Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1069 ATGCTCTTGAAAAAGTTTCAGCCCAAAGGAACCATTTCACTGAAATGGGGGGAGTGCCACATGCTCACAAACCTGAACATCTCCAATAACAAAATTTCTGGTGCTATACCACCTCAACTTGGGAAAGCAATTCAACTGCAACAACTTGATCTCTCCTCAAATCATCTAATTGGGAAGATCCCAAAAGAATTGGGTATGCTTCCTTTACTGTTCAAGTTGTTGCTAGGCAACAACAAACTTTCAGGAAGTATTCCTCTGGAATTGGGAAACTTATCCAATCTTGAAATCCTTGACTTGGCATCAAACAACTTAAGCGGTCCAATTCCCAAGCAACTGGGAAACTTCTGGAAATTATGGTCCTTGAACTTGAGCGAGAATAGATTTGTGGATAGCATTCCTGACGAAATTGGAAAGATGCATCATCTTCGAAGTCTCGATCTTAGTCAAAATATGTTGACAGGAGAGATGCCACCGCTGCTTGGAGAATTACAGAACCTGGAAACGTTGAATCTCTCCCACAATGGGCTATCTGGTACCATCCCACACACGTTTGATGATTTGATAAGTTTGACAGTTGCTGATATATCCTACAATCAATTGGAAGGTCCTCTCCCAAACATCAAAGCCTTTGCTCCATTTGAGGCATTCAAAAATAATAAAGGAAGAGAAAAACCAAATCTCCAGAAGCAGATGTTGAAGATCTATTTGCAATATGGGGCCATGATGGGGAATTGCTGTATGAACACATCATACAGGGGACCGACAATTTCAGTTCGAAGCAGTGTATTGGCACTGGAGGATATGGTACTGTTTACAAGGCTGAGTTGCCAACAGGTCGGTATCGTCAAGCTTTATGGCTTCAGTTTATTTGCAGAGAACTCATTTTTGGTTTATGAGTTTATGGAAAAGGGAAGCTTGCGAAACATTCTAAGAAACGACGAAGAAGCAGAAAAATTAGATTGGATTGTGAGGCTAAACGTTGTTAAAGGCGTGGCTAAAGCTTTATCTTATATGCACCATGATTGCTCACCTCCTATAATTCATCGAGACATATCAAGTAACAATGTTTTGTTAGATTCAGAATATGAAGCTCATGTATCTGACTTCGGCACAGCTAGGCTTTTAAAGTCGGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACTGCTCCAGAACTTGCATACTCGATGAAGGTGGATAATAAAACCGATGTTTATAGTTTCGGTGTTGTAACATTGGAAGTAATTATGGGGAGGCATCCTGGAGAACTCATCTCATCCCTGTTATCATCAGCGTCCTCCTCATCTACATCACCATCAACTGCCGGCCATTTCCTGTTGAATGATGTGATAGACCAGCGCCCCTCACCTCCTGTGAATCAAGTGGCAAAGGAAGTAGAGGTTGCAGTGAAGTTGGCATTTGCATGCTTGCGTGTTAATCCCCAATCTCGGCCAACTATGCAACAACTTATATTGGGTAAAGTAAGAAGATTTATCAGGTCTGAAGAAGTTTCAGCAGATAAGACATACTGTTATGACATCCATGGGGTGTACTACCGTGAAGAGACCCATTCTGTTCCTGTTGAGATGACAGAGGGGAAATGTGATGTCCTTGCAACCTTTGGAACTTATTTTTGTTTGAAGGGTCCCTCAAGCAGTAGCCAAGTGGGCTACTGA 1686 41.7 MLLKKFQPKGTISLKWGECHMLTNLNISNNKISGAIPPQLGKAIQLQQLDLSSNHLIGKIPKELGMLPLLFKLLLGNNKLSGSIPLELGNLSNLEILDLASNNLSGPIPKQLGNFWKLWSLNLSENRFVDSIPDEIGKMHHLRSLDLSQNMLTGEMPPLLGELQNLETLNLSHNGLSGTIPHTFDDLISLTVADISYNQLEGPLPNIKAFAPFEAFKNNKGREKPNLQKQMLKIYLQYGAMMGNCCMNTSYRGPTISVRSSVLALEDMVLFTRLSCQQVGIVKLYGFSLFAENSFLVYEFMEKGSLRNILRNDEEAEKLDWIVRLNVVKGVAKALSYMHHDCSPPIIHRDISSNNVLLDSEYEAHVSDFGTARLLKSDSSNWTSFAGTFGYTAPELAYSMKVDNKTDVYSFGVVTLEVIMGRHPGELISSLLSSASSSSTSPSTAGHFLLNDVIDQRPSPPVNQVAKEVEVAVKLAFACLRVNPQSRPTMQQLILGKVRRFIRSEEVSADKTYCYDIHGVYYREETHSVPVEMTEGKCDVLATFGTYFCLKGPSSSSQVGY* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19143602 19147732 - Vvi12g1069 Vvi12g1069 773592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1069 561 ProSitePatterns Tyrosine protein kinases specific active-site signature. 346 358 IPR008266 GO:0004672|GO:0006468
Vvi12g1069 561 Pfam Leucine Rich Repeat 46 64 IPR001611 GO:0005515
Vvi12g1069 561 ProSiteProfiles Protein kinase domain profile. 166 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1069 561 PRINTS Leucine-rich repeat signature 142 155 - -
Vvi12g1069 561 PRINTS Leucine-rich repeat signature 163 176 - -
Vvi12g1069 561 Pfam Protein kinase domain 276 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1069 561 SUPERFAMILY Protein kinase-like (PK-like) 275 494 IPR011009 -
Vvi12g1069 561 Gene3D Transferase(Phosphotransferase) domain 1 260 520 - -
Vvi12g1069 561 Gene3D Ribonuclease Inhibitor 3 233 IPR032675 -
Vvi12g1069 561 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Vvi12g1069 561 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 9 222 - -
Vvi12g1069 561 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 280 493 - -
Vvi12g1069 561 SUPERFAMILY L domain-like 13 210 - -
Vvi12g1069 561 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 280 493 - -
Vvi12g1069 561 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 222 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76085 PF00069 Pkinase 1.20E-32 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1069 - - vri:117928266 575.089