Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g107 ATGGGAGCTGAACCCATCATTGTCTTTTCAGTTCTCTTTATCTTCTTCACCGTCCCTGGATTCTCAGCCAAGCTCCCAGCAGATGAATTGAAGGCGCTGAAGGTGATTGGGACGAGATTGGGGAAGAGGGATTGGGATTTTGGGAAGGACCCATGTAGTGGAGAAGGGAACTGGAGTTCTGTGAATGAGAAAAAGGGGGTTGAGAGCTCTGTAACTTGTGACTGCACTTTCCACCACAATGCCTCCTGCCATGTAGTAACCATAGCTTTAAAAGCACAAAATTTATCAGGAAGCCTACCACCAGAACTCTCCAAACTTTATCACCTCAAACATCTGGACTTGTCTCGCAACTTATTTAGCGGTTCGATACCTTCCCAATGGGCTACCATGCGTTTGGTCGAACTCTCCTTGATGGGGAACAGGCTATCTGGTCCATTCCCAAAAGTCCTCACCAACATCACCACCCTCAGGAACCTGAGCATAGAAGGGAACCTGTTTTCAGGACCTATTCCTCCAGAGATTGGAAAGTTGATCAGAATAGAAAAAATGGTTCTATCGTCAAATGCCTTCACAGGAGAACTGCCAGTGGCACTTGCCAAGTTGACTAACTTGACTGATATGAGGATAAATGACAATCATTTCTCTGGAAGGATACCTGAGTTCATCGGCAATTGGACACATGTTCAAAAACTGCACATTCAGGGTAGCTCTCTCGAGGGGCCTATTCCTTCAAGCATTTCTGCTCTGACAAGCTTAAGTGATCTGAGGATTAGTGACTTAAAAGGTAGAGGGTCTACTTTTCCACCATTGAGTACCATTGAATCCCTGAAGACATTGGTGCTGAGAAAATGCTTAATACATGGAGAAATTCCAGAATATATAGGGGATATGAAGAAACTGAAGCACTTAGATCTTAGTTTCAATGAGTTGGCTGGTGAAATTCCTACCTCATTTCAGGAACTAGCTAAAACCGATTTCATGTATTTGACAGGGAATATGCTCACTGGACATATACCTGACTGGATCCTAGGAACAAACAAGAATTTTGATCTTTCTTATAACAATTTCACTTGGGATAGTTCAAGTCCGGTTGAATGTCCTCGAGGGAGCGTAAACCTAGTGGAGAGCTACTCATCATCATCAGTTAGACGAAGTATTCATTCATGCCTAAAACAAAACTTTCCATGTTCTGCTTCAAGTAATCAATATCATTATTCCTTGCACATTAATTGTGGTGGAAAAGAAACAAGTATCAATGGTAGCACCAAGTATGAAGCTGACTTAGAACCAACCGGTGCTTCAATGTTTTACTTGGGTCAGAACTGGGCATTCAGCAGCACTGGAAACTTCATGGACAATGATGTTGATGGGGATGCCTATATTGAAGCCAATACTTCTTCCCTTTCCAATGTCTCTGTGCTTGATGTCGAACTTTACAAAAAAGCGCGTGTTTCTCCCCTCTCCCTGACTTATTATGGACTATGTCTTGGAAATGGGAATTACACTGTTAAACTTCACTTTGCAGAGATTATTTTCATAAATGACAAGTCCTTTAACAGCCTTGGGGAGCGTATATTTGATGTGTACATCCAGGGAAAGTTGGTCCTGAAAGATTTTAACATTGAAAAGGAGGCTGGTGGGACTGGCAAGCCCATTATAAAGAACTTCACTGCAGAAGTAACAAGTCACACTTTAAAGGTCCAGTTTTACTGGGCTGGACGAGGGACAACCGGAATCCCCCTGAGAGGATTTTATGGGCCTCTCATATCTGCAATATCAGTGGATCCCAATTTTGAACCTCCTTCCCCTCCTGGAAAAAATTGGGACATTAAAATAGTGGTTGGGGCTGCAGCTGTTGCGGTAGTTCTTGTTCTTCTGACACTGGGTATTTTATGGAGGAAAGGCTGGCTTGGAGGCAAAACATCTGAAGATAAAGAGCTTAGAGGTCTAGACCTGCAAACAGGATTATTTACATTAAGACAAATCAAAGCTGCAACCAAGAACTTTGATGCAGAAAACAAGCTGGGAGAAGGTGGTTTTGGTGCAGTTTTCAAGGGTACATTATCAGATGGAACAGTTATTGCAGTGAAGCAGCTTTCCTCAAAATCTAAGCAAGGAAACCGTGAATTTGTGAATGAAGTAGGGATGATATCTGCACTGCAACACCCAAATCTTGTTAAGCTGTATGGATGTTGTATTGAAGGCAATCAGTTATCGCTGGTATATGAATACATGGAGAACAATAGTCTGTCCCGTGCTCTTTTTGGGCGTGATGCAACATACAAACTGAAATTAAACTGGTCCACCAGACAGAATATATGTGTTGGTATAGCTAGAGGTTTAGCATATCTCCATGAAGAGTCAACATTGAAGATTGTGCATAGAGACATTAAAACTAGTAATGTTTTGCTTGATAAGGACATGAATGCCAAAATATCTGATTTTGGATTAGCAAAGCTAGATGAAGATGATAACACCCACATCAGTACTCGGATAGCTGGAACCATAGGTTATATGGCTCCTGAATATGCAATGCGCGGTTACTTGACTGACAAAGCAGACGTGTACAGCTTTGGAGTTGTGGCACTGGAAATTGTCAGTGGAAAGAGCAACACAAATTATAGACCAAAGGAGGAATTTGTTTATCTTCTTGACTGGGCCTATGTTCTACAGGAGAGAGGAGGCCTATTGGAGTTGGTTGATCCAGACTTAGGTTCCGAATATTCATCTGAACAGGCAATGGTGATGCTGAATGTCGCTCTCCTCTGCACCAATGCATCCCCCACTCTTAGGCCTACAATGTCTCAAGTGGTAAGCATGCTTGAAGGCCGGACTGCAGTTCAGGATCTTCTTTCAGATCCAGGGTTCTCAACCATTAATTCAAAGTATAAGGCCATCAGAAATTTCTGGCAGAACCCAAGTGAAACTCAAAGCATGTCTGTCTATGGCACCTATACTGATTCCTCCGAGACAGTCACAGAAAAAGAAGAGAATAACCGGCTTTTAAGAGTCAGTTTCCATACCTGTCCTGAGTAA 3036 42.49 MGAEPIIVFSVLFIFFTVPGFSAKLPADELKALKVIGTRLGKRDWDFGKDPCSGEGNWSSVNEKKGVESSVTCDCTFHHNASCHVVTIALKAQNLSGSLPPELSKLYHLKHLDLSRNLFSGSIPSQWATMRLVELSLMGNRLSGPFPKVLTNITTLRNLSIEGNLFSGPIPPEIGKLIRIEKMVLSSNAFTGELPVALAKLTNLTDMRINDNHFSGRIPEFIGNWTHVQKLHIQGSSLEGPIPSSISALTSLSDLRISDLKGRGSTFPPLSTIESLKTLVLRKCLIHGEIPEYIGDMKKLKHLDLSFNELAGEIPTSFQELAKTDFMYLTGNMLTGHIPDWILGTNKNFDLSYNNFTWDSSSPVECPRGSVNLVESYSSSSVRRSIHSCLKQNFPCSASSNQYHYSLHINCGGKETSINGSTKYEADLEPTGASMFYLGQNWAFSSTGNFMDNDVDGDAYIEANTSSLSNVSVLDVELYKKARVSPLSLTYYGLCLGNGNYTVKLHFAEIIFINDKSFNSLGERIFDVYIQGKLVLKDFNIEKEAGGTGKPIIKNFTAEVTSHTLKVQFYWAGRGTTGIPLRGFYGPLISAISVDPNFEPPSPPGKNWDIKIVVGAAAVAVVLVLLTLGILWRKGWLGGKTSEDKELRGLDLQTGLFTLRQIKAATKNFDAENKLGEGGFGAVFKGTLSDGTVIAVKQLSSKSKQGNREFVNEVGMISALQHPNLVKLYGCCIEGNQLSLVYEYMENNSLSRALFGRDATYKLKLNWSTRQNICVGIARGLAYLHEESTLKIVHRDIKTSNVLLDKDMNAKISDFGLAKLDEDDNTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQERGGLLELVDPDLGSEYSSEQAMVMLNVALLCTNASPTLRPTMSQVVSMLEGRTAVQDLLSDPGFSTINSKYKAIRNFWQNPSETQSMSVYGTYTDSSETVTEKEENNRLLRVSFHTCPE* 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1992494 2002600 - Vvi12g107 Vvi12g107 772630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g107 1011 SMART serkin_6 669 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g107 1011 ProSiteProfiles Protein kinase domain profile. 669 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g107 1011 SUPERFAMILY Protein kinase-like (PK-like) 653 978 IPR011009 -
Vvi12g107 1011 SUPERFAMILY L domain-like 73 357 - -
Vvi12g107 1011 Pfam Leucine rich repeat 275 334 IPR001611 GO:0005515
Vvi12g107 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Vvi12g107 1011 Gene3D Ribonuclease Inhibitor 37 154 IPR032675 -
Vvi12g107 1011 Gene3D Ribonuclease Inhibitor 155 222 IPR032675 -
Vvi12g107 1011 Gene3D Phosphorylase Kinase; domain 1 639 744 - -
Vvi12g107 1011 CDD STKc_IRAK 675 943 - -
Vvi12g107 1011 Gene3D Ribonuclease Inhibitor 223 367 IPR032675 -
Vvi12g107 1011 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 78 286 - -
Vvi12g107 1011 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 286 342 - -
Vvi12g107 1011 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 378 982 - -
Vvi12g107 1011 Pfam Protein tyrosine and serine/threonine kinase 671 941 IPR001245 GO:0004672|GO:0006468
Vvi12g107 1011 Gene3D - 402 596 - -
Vvi12g107 1011 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Vvi12g107 1011 Gene3D Transferase(Phosphotransferase) domain 1 745 953 - -
Vvi12g107 1011 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 378 982 - -
Vvi12g107 1011 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 78 286 - -
Vvi12g107 1011 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 286 342 - -
Vvi12g107 1011 Pfam Malectin domain 406 592 IPR021720 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g275 Vvi12g107 ECH
Vvi12g107 Vvi19g70 ECH
Vvi10g270 Vvi12g107 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76086 PF07714 PK_Tyr_Ser-Thr 6.20E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g107 - - vvi:100252351 1991.85