Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1079 ATGGCCTTTGAATATTCTTCATCCTACTCCTTACTCTCTCGACTCTTTATCACTCCTTACTACTTCATATTTCTCCTTGTCCTTCTATACTCAATATCATCATTCCATGTCACTTCTATATCTGCCTCTACACCTACCACTTCTCTTTCAAAAGTTGAAAAAGATCAAGAAAGACTCGCTCTTCTAACATGGAAAGCCAGTCTTGATAATCAAACCCAATCTTTCCTCTCTTCTTGGTCTGGACGCAATTCTTGCTATCATTGGTTTGGATTAACTTGTCACAAGTCAGGAAGTGTCTCCAATTTAGAACTTGACAATTGCGGTTTGAGAGGTACACTCCACAATCTCAATTTCTCATCACTCCCTAACCTTCTCACTCTTAATCTTTATAACAACTCCCTTTATGGAACCATTCCAATCAACATTGGTAATCTTTCCAAACGAATCACAAATCTTAACTTTGCTTTCAATCATTTCACTGGTGTAATATCTCCCCAACTTGGATTTCTAACATCTCTTAGTGTTCTAGCATTGTCTTCTAATAATTTTAGAGGCCCAATTCCTCCTTCCATAGGTAACTTGAGGAACTTAACCACTTTATACCTTCATACTAACAAACTATCTGGTTCTATTCCTCAAGAAATTGGATTGTTGACATCACTTAATGATCTTGAGTTGGCAACTAATAGTCTCACTGGTTCAATCCCTCCATCCATAGGAAACTTGAGAAACTTAACCACTCTATATCTTTTTGAGAACGAGCTTTCTGGTTTCATCCCTCAAGAAATTGGATTGTTAAGATCTCTTAATGATCTTGAATTGTCAACTAACAATCTCACTGGTCCAATCCCTCCTTCCATAGGAAACCTAAGGAACTTAACCACTTTGCATCTTTTCAAGAATAAGCTTTCTGGTTCCATCCCCCAAGAAATTGGATTGTTAAAATCTCTTAATGATCTTCAATTGTCAACTAACAATCTCACTGGTCCAATCCCTCCTTCCATAGGTAACTTGAGGAACTTAACCACTTTATACCTTCATACAAACAAACTATCCGATTCTATTCCTCAAGAAATTGGATTGTTGACATCACTTAATGATCTTGAGTTGGCAACTAATAGTCTCACTGGTCCGATCCCTCCATCCATTGGAAACTTGAGAAATTTAACCACTTTATATCTTTTTGAGAACGAGCTTTCTGGTTTCATCCCTCAAGAAATTGGATTGTTAAGATCTCTTAATGATCTTCAATTGTCATTTAACAATCTCATCGGTCCAATCCCTCCTTCGATAGGTAACTTGAGGAACTTAACGACTTTGTACCTTCATACAAACAAACTATCTGGTTCTATTCCTCAAGAAATTGGATTGTTGACATCACTTATAGATCTTGAGTTGGAAACTAATAGTCTCACTGCTAATAGTCTCAGTGGTCCAATCCCTCCATCCATAGGAAACTTGTCCAGCTTAACCTTTTTGTTCCTTGATCACAACAAGCTTAGTGGTGCGATTCCTCTTGAAATGAATAATATCACTCATTTGAAATCTTTACAGTTAGTTGAGAATAACTTCATTGGCCAACTACCACAAGAGATATGCCTTGGTAGTGTTCTTGAAAACTTTACAGCCTCTGGAAATCATTTCACTGGTCCTATTCCAAAAGGCTTGAAAAATTGCACTAGCTTATTCAGAGTTAGGCTTGAAAGAAATCAATTGACAGGGGACATAGCCGAAAGTTTTGGTGTGTACCCAACTCTAAATTATATTGATCTAAGCAGCAACAATTTTTATGGTGAGCTTTCTGAGAAATGGGGGCAGTGCCACATGCTCACAAACCTGAACATCTCCAACAACAATATTTCTGGTGCTATACCGCCTCAACTTGGGAAAGCAACTCAGCTGCGACAGCTTGATCTCTCCGCCAATCATCTAAGTGGGAAGATCCTGAAAGAGTTGGGTATGTTGCCATTATTGTTCAAATTGTTATTAGGAAACAACAGTCTTTCAGGTAGTATTCCTTTGGAATTGGGAAACTTATCCAATCTTGAAATTCTTGACTTGGCATCAAACAACATAAGCGGTTCAATTCCCAAACAACTGGGAAACTTCTGGAAATTAAGGTCCTTCAACTTGAGCGAGAATAGATTTTTGGAAGGTCCTCTCCCCAACATCAAAGCCTTCGCTCCATTTGAGGCATTCAAAAATAATAAAGGAAGAGAAAAAACAAGTCTCCAGAAGCAGATGTCGAAGATCTATTTGCAATATGGGGCCATGATGGGGAATTGTTGTATGAGCACATCATACAGGGGACCGACAATTTCAGTTCGAAACAGTGTATTGGCACTGGAGGATATGATTCATGCTTTAACACAGATAAGGCACCGCAACATCGTCAAGCTTTATGGCTTCAGTTCATTTGCAGAGAACTCATTTTTGGTTTATGAGTTTATGGAAAAGGGGAGTTTGCAAAACATTCTATGCAATGACGAAGAAGCAGAAAGATTAGATTGGATTGTGAGGCTAAACGTTATTAAAGGCGTGGCTAAAGCTTTATCGTATATGCACCATGATTGCTCACCTCCTGTAATTCATCGAGACATATCGAGCAACAATGTTTTGTTAGATTCAGAATATGAAGCTCATGTATCTGACTTCGGCACGGCTAGGCTTTTAAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACAGCTCCAGAACTTGCTTACACAATGAAGGTGGATAATAAAACCGATGTTTACAGCTTCGGTGTTGTGACATTAGAAGTAATTATGGGAAGGCATCCCGGAGAGCTTATCTCATCCCTGTTATCATCAGCGTCCTCCTCATCTGCATCACCATCAACGGTCGGCCATTTCCTGCTGAATGATGTGATAGACCAGCTTGGCATTTGCATGTTTGTGCGTTAA 2943 38.84 MAFEYSSSYSLLSRLFITPYYFIFLLVLLYSISSFHVTSISASTPTTSLSKVEKDQERLALLTWKASLDNQTQSFLSSWSGRNSCYHWFGLTCHKSGSVSNLELDNCGLRGTLHNLNFSSLPNLLTLNLYNNSLYGTIPINIGNLSKRITNLNFAFNHFTGVISPQLGFLTSLSVLALSSNNFRGPIPPSIGNLRNLTTLYLHTNKLSGSIPQEIGLLTSLNDLELATNSLTGSIPPSIGNLRNLTTLYLFENELSGFIPQEIGLLRSLNDLELSTNNLTGPIPPSIGNLRNLTTLHLFKNKLSGSIPQEIGLLKSLNDLQLSTNNLTGPIPPSIGNLRNLTTLYLHTNKLSDSIPQEIGLLTSLNDLELATNSLTGPIPPSIGNLRNLTTLYLFENELSGFIPQEIGLLRSLNDLQLSFNNLIGPIPPSIGNLRNLTTLYLHTNKLSGSIPQEIGLLTSLIDLELETNSLTANSLSGPIPPSIGNLSSLTFLFLDHNKLSGAIPLEMNNITHLKSLQLVENNFIGQLPQEICLGSVLENFTASGNHFTGPIPKGLKNCTSLFRVRLERNQLTGDIAESFGVYPTLNYIDLSSNNFYGELSEKWGQCHMLTNLNISNNNISGAIPPQLGKATQLRQLDLSANHLSGKILKELGMLPLLFKLLLGNNSLSGSIPLELGNLSNLEILDLASNNISGSIPKQLGNFWKLRSFNLSENRFLEGPLPNIKAFAPFEAFKNNKGREKTSLQKQMSKIYLQYGAMMGNCCMSTSYRGPTISVRNSVLALEDMIHALTQIRHRNIVKLYGFSSFAENSFLVYEFMEKGSLQNILCNDEEAERLDWIVRLNVIKGVAKALSYMHHDCSPPVIHRDISSNNVLLDSEYEAHVSDFGTARLLKSDSSNWTSFAGTFGYTAPELAYTMKVDNKTDVYSFGVVTLEVIMGRHPGELISSLLSSASSSSASPSTVGHFLLNDVIDQLGICMFVR* 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19221974 19226262 - Vvi12g1079 Vvi12g1079 773602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1079 980 Pfam Leucine rich repeat N-terminal domain 55 93 IPR013210 -
Vvi12g1079 980 ProSitePatterns Tyrosine protein kinases specific active-site signature. 862 874 IPR008266 GO:0004672|GO:0006468
Vvi12g1079 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 780 972 - -
Vvi12g1079 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 280 429 - -
Vvi12g1079 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 255 380 - -
Vvi12g1079 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 22 288 - -
Vvi12g1079 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 203 329 - -
Vvi12g1079 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 399 716 - -
Vvi12g1079 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 351 472 - -
Vvi12g1079 980 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 399 716 - -
Vvi12g1079 980 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 203 329 - -
Vvi12g1079 980 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 780 972 - -
Vvi12g1079 980 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 280 429 - -
Vvi12g1079 980 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 22 288 - -
Vvi12g1079 980 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 255 380 - -
Vvi12g1079 980 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 351 472 - -
Vvi12g1079 980 ProSiteProfiles Leucine-rich repeat profile. 436 458 IPR001611 GO:0005515
Vvi12g1079 980 SMART LRR_typ_2 194 218 IPR003591 -
Vvi12g1079 980 SMART LRR_typ_2 434 458 IPR003591 -
Vvi12g1079 980 SMART LRR_typ_2 170 193 IPR003591 -
Vvi12g1079 980 SMART LRR_typ_2 386 410 IPR003591 -
Vvi12g1079 980 SMART LRR_typ_2 290 314 IPR003591 -
Vvi12g1079 980 SMART LRR_typ_2 338 362 IPR003591 -
Vvi12g1079 980 SMART LRR_typ_2 679 703 IPR003591 -
Vvi12g1079 980 SMART LRR_typ_2 487 511 IPR003591 -
Vvi12g1079 980 SMART LRR_typ_2 121 145 IPR003591 -
Vvi12g1079 980 SMART LRR_typ_2 242 266 IPR003591 -
Vvi12g1079 980 ProSiteProfiles Leucine-rich repeat profile. 196 218 IPR001611 GO:0005515
Vvi12g1079 980 SUPERFAMILY L domain-like 471 719 - -
Vvi12g1079 980 Gene3D Ribonuclease Inhibitor 472 748 IPR032675 -
Vvi12g1079 980 Gene3D Ribonuclease Inhibitor 313 471 IPR032675 -
Vvi12g1079 980 Pfam Protein kinase domain 786 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1079 980 SUPERFAMILY Protein kinase-like (PK-like) 784 944 IPR011009 -
Vvi12g1079 980 Gene3D Ribonuclease Inhibitor 213 311 IPR032675 -
Vvi12g1079 980 Gene3D Ribonuclease Inhibitor 53 212 IPR032675 -
Vvi12g1079 980 SUPERFAMILY L domain-like 253 472 - -
Vvi12g1079 980 Gene3D Transferase(Phosphotransferase) domain 1 749 961 - -
Vvi12g1079 980 ProSiteProfiles Protein kinase domain profile. 682 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1079 980 SUPERFAMILY L domain-like 56 328 - -
Vvi12g1079 980 ProSiteProfiles Leucine-rich repeat profile. 340 362 IPR001611 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76088 PF00069 Pkinase 4.90E-31 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1079 - - vvi:100855076 1163.29