Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1086 ATGATCTTAACTTGGCATTCAATGGGGACTAGCAATTTCAGTTTGAAACAGTGTATTGACATTGGAGGATATGGTACTGTTTACAAGGCTGAGTTGCTAACAGGTTGGGTTGTTCCTGTGAAAAATCTTCACTCATCAGAAGATGGAGATATGGATGATTTGAAAGCTTTCAAAAGCGAGATTCATGCTTTAACACAGATAAGGCATCACAATATCGTCAAGCGTTATAGCTTCTATTCATTTGCAGAGAACTCGTTTCTGGTTTATGAGTTTATGGAAAATGGGAACTTGAGAAACATTCTAAGCAACGATGAAGAAGCAGAAAAATTAGATTGGATTGTGAGGCCAAATGTTGTTAAAGGCATGGCTAAAGCTCTATCCTATATGCACCATGATTGCTCACCTCCTATAATTCATCGAGACATATTGAGCAACAATGTTTTGTTAGATTCAGAATATGAAGCTTATGTTTCTGACTTCGGCACGACTAGGCTTTTAAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACTGCTCCAGAACTTGCTTTTACGATGAAGGTGGATAATAAAACCGATGTTTATAGCTTCGGTGTTGTAACATTGGAAGTAATTATGGGAAGGCATCTTGGAGAACTCATCTCGTCCCTATTATCATCAATGTCCTCATCATCACCATTATCATCAATTGTGGACCATCTCCTATTAAATGATGTGATGGACCAGCACCCCTCACCTCTAGTGAATCAAGTGGCTGAGGAAGTAGTGGTTGCAGTGAAGTTGGCATTAGCATTCTTGCGTGTTAATCCCCAGTCTCGGCCAACTATGCAACAAGTTGCTCGAGCACTCTCAACACAGTGGCGACCATTTTCAAAACCGTTCCACACTATTATGTTGGGTGAGTTGTTGGGTCACGGTCATGGGGGTGAAACTAGCTGA 954 40.46 MILTWHSMGTSNFSLKQCIDIGGYGTVYKAELLTGWVVPVKNLHSSEDGDMDDLKAFKSEIHALTQIRHHNIVKRYSFYSFAENSFLVYEFMENGNLRNILSNDEEAEKLDWIVRPNVVKGMAKALSYMHHDCSPPIIHRDILSNNVLLDSEYEAYVSDFGTTRLLKSDSSNWTSFAGTFGYTAPELAFTMKVDNKTDVYSFGVVTLEVIMGRHLGELISSLLSSMSSSSPLSSIVDHLLLNDVMDQHPSPLVNQVAEEVVVAVKLALAFLRVNPQSRPTMQQVARALSTQWRPFSKPFHTIMLGELLGHGHGGETS* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19344562 19346864 - Vvi12g1086 Vvi12g1086 773609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1086 317 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 308 - -
Vvi12g1086 317 Gene3D Transferase(Phosphotransferase) domain 1 92 296 - -
Vvi12g1086 317 ProSiteProfiles Protein kinase domain profile. 13 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1086 317 SUPERFAMILY Protein kinase-like (PK-like) 5 288 IPR011009 -
Vvi12g1086 317 Pfam Protein kinase domain 16 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1086 317 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 10 308 - -
Vvi12g1086 317 Gene3D Phosphorylase Kinase; domain 1 7 91 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76091 PF00069 Pkinase 2.00E-40 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1086 - - vvi:100255940 459.144