Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1093 ATGGCTGGTGACTCCACTGTTCACGGAGAGACTCTGGTTAATGTGGTTGAGGTCTCTGGGGAAGCTGTTTTCTTGCATGGGGAGCTAGATTTGTGGATTTTAGAGGCAAAATCTCTTCCAAATATGGATTTAGCTACAGAAAGAGTGAGAAGATGCTTCAATATGTTCGGATCTTGCACATCTCCTTTTAAGATAAGGCATAAGCATTCGAGCAAGCATCATTCAATTATTACCAGTGACCCTTATGTGTCTGTTTGTCTAGCAGGGGCGACAATAGCACAAACAAGAGTAATTCCCAATTCTGAGAACCCTTCATGGGGCGAACATTTTTGTGTGCCAGTTGCTCATCCTGTCATGAAAGTTGAATTTCATGTTAAAGATAATGACATTCTTGGGGCTCAACTAATTGGAGTGGTGGGAATATCTGTTGAGAAACTTATCTCAGGAAATGCTGTTAGTGGTTGGTTCCCTATTGTTGGTTCCCAGGGGAATCCCTTGAAGCCCTATCCTGAATTACATGATGGTGTTGGCGCTGGCTCAGGCTATCTTGGTGTTCCCAATACATATTTTCCTCTCCACAAAGGAGGTAGCATTACTCTTTATCAGGATGCTCATGTGCCTAAAGGAATGTTACCTGAAATTTTACTTGATGGTGGAAAAATTTTTCAGCAAGGTCAATGCTGGGAAGAAATTTGCCATGCTATGTTGGAAGCTCACCACCTGATATATATTATTGGGTGGTCCATATTCCACCCAGTCAAGCTTCTGAGAGAGCCAACAAAGCCAGTACCTGCTGGTGGAGAGCTTTCCCTTGGGGAATTGTTGAAATACAAGTCAGAAGAAGGAGTTCGAGTCCTTATGTTGATTTGGGATGATAAAACCTCACATGACAGATTACTTTTTAAAACAGAAGGTGTCATGCAAACTCACGATGAAGAAACACGAAAATTTTTTAAACACTCAGGTGTCCATTGTGTGCTTTCTCCTCGTTATGCCAGCAACAAGCTTAGCATTTTCAAGCAACAGGTAGTGGGAACCCTTTTTACACATCATCAGAAGTGTGTGCTTCTGGACACTCAAGCTCCTGGAAACAACAGGAAAATAACTGCTTTCATTGGTGGTCTAGATTTATGTGATGGCCGATATGACACTCCTGAGCACAGGCTCTTTAGTGATCTTGACACCGTATTTTCAAATGATTTTCACAATCCTACATTTCCATCTCGTGCCCGTGGCCCGAGGCAACCATGGCATGATTTACACTGTAAAGTTGAGGGTCCTGCTGCATACGATATAATGACAAATTTTGAACAAAGATGGAGAAAAGCAGCAAAATGGCGTGATTTCAGGCTCAAAAAGGTCACACATTGGCATGAAGATGCTTTGATAAGGCTAGACCGCATTTCATGGATAATCACTCCCTCCTCAGGTCCCACTGGTGATCATGCTGTACGCGTTACCACTGAAGAAGATCCAGAGACTTGGCATGTGCAGGTATTTCGGTCAATTGATTCAGGATCTGTGAGGGGATTCCCAAAGCTTGTTCAGGATGCTGAGGCACAGAATCTTGTTTGTGGGAAGAATCTGAAAATAGATAGGAGCATACATGCTGCTTATGTGAAAGCAATAAGATCGGCACAACACTTCATATACATAGAGAACCAGTATTTTCTTGGATCCGCATATCACTGGCCATCATACAAAAATGCAGCAGGTGCAGATAACTTAATTCCTATGGAACTGGCCTTAAAAATTTCTAGCAAAATCAGTGCAAATGAACATTTCCGTGTCTATATAGTGGTACCAATGTGGCCAGAAGGTGTACCAACCAGTGCTTCCGTGCAGGAAATTCTTTTTTGGCAGGGACAAACAATGAGTATGATGTACCAGATTATTGGGCAGGCTATTCATAAAGCAGGCCTTTCTGATACACATCACCCACAGGATTATTTGAACTTTTACTGCCTTGGAAAACGTGAAGCTTCATCTACAGAAAGTTCTGCTCAAACAAGCAATTCTTCTGAGAACCGTGCATTGGGATTAGCTCAAAAGTTCCGCAGATTTATGATTTATGTCCATGCCAAAGGGATGATAGTTGATGATGAATATGTCTTGATAGGATCTGCTAACATTAACCAGAGATCCTTGGACGGTTCAAGGGATACTGAGATTGCTATGGGTGCTTATCAGCCATCATACACATGGTCAGGAAAGAAGACTCATCCACATGGCCAGGTATATGGCTATCGAATGTCTCTCTGGGCCGAGCACCTTGGCACCCTTGAGGATTCCTTCTGCCAACCAGAGTCTCTAGAATGCATCAGACAAGTGAACAGCATCGCCAAAAATAACTGGCAGATATATGCAGCAGACGAGAACAAGGAGATGACAGGGCATTTGATGCAATACCCAATTCAGGTGAGCAAAAATGGAAATGTAAGCACATTGCCCGGTCATGAGTGCTTTCCAGATGTAGGCGGTAAAGTTCTTGGATCACCCACTAATCTTCCCGACGCACTAACCACATGA 2529 42.98 MAGDSTVHGETLVNVVEVSGEAVFLHGELDLWILEAKSLPNMDLATERVRRCFNMFGSCTSPFKIRHKHSSKHHSIITSDPYVSVCLAGATIAQTRVIPNSENPSWGEHFCVPVAHPVMKVEFHVKDNDILGAQLIGVVGISVEKLISGNAVSGWFPIVGSQGNPLKPYPELHDGVGAGSGYLGVPNTYFPLHKGGSITLYQDAHVPKGMLPEILLDGGKIFQQGQCWEEICHAMLEAHHLIYIIGWSIFHPVKLLREPTKPVPAGGELSLGELLKYKSEEGVRVLMLIWDDKTSHDRLLFKTEGVMQTHDEETRKFFKHSGVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLLDTQAPGNNRKITAFIGGLDLCDGRYDTPEHRLFSDLDTVFSNDFHNPTFPSRARGPRQPWHDLHCKVEGPAAYDIMTNFEQRWRKAAKWRDFRLKKVTHWHEDALIRLDRISWIITPSSGPTGDHAVRVTTEEDPETWHVQVFRSIDSGSVRGFPKLVQDAEAQNLVCGKNLKIDRSIHAAYVKAIRSAQHFIYIENQYFLGSAYHWPSYKNAAGADNLIPMELALKISSKISANEHFRVYIVVPMWPEGVPTSASVQEILFWQGQTMSMMYQIIGQAIHKAGLSDTHHPQDYLNFYCLGKREASSTESSAQTSNSSENRALGLAQKFRRFMIYVHAKGMIVDDEYVLIGSANINQRSLDGSRDTEIAMGAYQPSYTWSGKKTHPHGQVYGYRMSLWAEHLGTLEDSFCQPESLECIRQVNSIAKNNWQIYAADENKEMTGHLMQYPIQVSKNGNVSTLPGHECFPDVGGKVLGSPTNLPDALTT* 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19425238 19447632 - Vvi12g1093 Vvi12g1093 773616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1093 842 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 161 IPR035892 -
Vvi12g1093 842 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 688 715 IPR001736 GO:0003824
Vvi12g1093 842 PIRSF PLD_plant 15 842 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi12g1093 842 Gene3D Endonuclease Chain A 220 462 - -
Vvi12g1093 842 Gene3D Endonuclease Chain A 500 734 - -
Vvi12g1093 842 Pfam PLD-like domain 540 724 IPR025202 -
Vvi12g1093 842 SUPERFAMILY Phospholipase D/nuclease 227 450 - -
Vvi12g1093 842 Pfam Phospholipase D Active site motif 347 381 IPR001736 GO:0003824
Vvi12g1093 842 SUPERFAMILY Phospholipase D/nuclease 507 774 - -
Vvi12g1093 842 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 346 381 IPR001736 GO:0003824
Vvi12g1093 842 PANTHER PHOSPHOLIPASE D 21 842 IPR015679 -
Vvi12g1093 842 Gene3D C2 domain 23 166 IPR035892 -
Vvi12g1093 842 PANTHER PHOSPHOLIPASE D 21 842 - -
Vvi12g1093 842 SMART C2_3c 28 155 IPR000008 -
Vvi12g1093 842 ProSiteProfiles C2 domain profile. 7 156 IPR000008 -
Vvi12g1093 842 Pfam C2 domain 27 158 IPR000008 -
Vvi12g1093 842 SMART pld_4 346 381 IPR001736 GO:0003824
Vvi12g1093 842 SMART pld_4 688 715 IPR001736 GO:0003824
Vvi12g1093 842 CDD C2_plant_PLD 22 173 - -
Vvi12g1093 842 Pfam Phospholipase D C terminal 762 832 IPR024632 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1093 K01115 - vvi:100261019 1692.94