Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1122 ATGCTAACCAAGCTCAAAGATGCTTCCCTGTTTGGCTACTCGCGCGAGACTATCATCAAAGCAACAGTAATGATGTTGATCGTGGCAGGCTCTGACACCACTTCTATTACCTCCACATGGCTCCTGTCTGCATTGTTGAACAATAGACATGTTATGAAGCATGCTCAGGAGGAGCTAGACTTAAAAGTTGGTAGAGATAGATGGGTGGAACAATCAGATATCCAGAACCTAGTTTATCTTAAGGCTATTGTTAAGGAAACACTAAGGCTATACCCAGCAGTTCCCCTATTAGTACCACACGAGGCAATGGAAGACTGTCATGTTGGTGGGTATCACATTCCCAAAGGCACCCGCTTGCTAGTCAATGCATGGAAGTTGCACCGAGATCCTGCTGTTTGGTCTAACCCTGAAGAGTTTCAGCCAGAGAGGTTTCTGACAAGCCATGCAACTGTAGATGTTTTAGGCCAGAATTTTGAGTTAATCCCATTTGGTTCTGGTAGAAGATCTTGCCCAGGAATCAATATGGCCTTACAAATGTTACACCTGACAATTGCTCAGTTGCTTCAAGGATTTGACATGGCTACACCATCAAATTCTCCGGTGGACATGGCAGAAGCGATAAGTATCACCATGCCTAAACTCACTCCGCTGGAAGTTATGCTCACCCCCCGCCTTCCTGCTGAACTTTACTAG 693 45.45 MLTKLKDASLFGYSRETIIKATVMMLIVAGSDTTSITSTWLLSALLNNRHVMKHAQEELDLKVGRDRWVEQSDIQNLVYLKAIVKETLRLYPAVPLLVPHEAMEDCHVGGYHIPKGTRLLVNAWKLHRDPAVWSNPEEFQPERFLTSHATVDVLGQNFELIPFGSGRRSCPGINMALQMLHLTIAQLLQGFDMATPSNSPVDMAEAISITMPKLTPLEVMLTPRLPAELY* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19947480 19948741 - Vvi12g1122 Vvi12g1122 773645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1122 230 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 163 172 IPR017972 GO:0005506|GO:0016705
Vvi12g1122 230 Pfam Cytochrome P450 19 213 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PANTHER CYTOCHROME P450 FAMILY PROTEIN 1 230 - -
Vvi12g1122 230 PRINTS P450 superfamily signature 82 93 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PRINTS P450 superfamily signature 170 181 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PRINTS P450 superfamily signature 29 46 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PRINTS P450 superfamily signature 161 170 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PANTHER CYTOCHROME P450 82C3-RELATED 1 230 - -
Vvi12g1122 230 Gene3D Cytochrome P450 3 226 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PRINTS E-class P450 group I signature 38 64 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PRINTS E-class P450 group I signature 81 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PRINTS E-class P450 group I signature 170 193 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PRINTS E-class P450 group I signature 18 35 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PRINTS E-class P450 group I signature 122 146 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 PRINTS E-class P450 group I signature 160 170 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 SUPERFAMILY Cytochrome P450 16 224 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1122 230 Coils Coil 227 230 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1122 - - vvi:100266388 462.996