Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1128 ATGGGTTGGTCTTGGATTTTGATAATTCAATTGAATTTCTTGATCGGAAATGCAGATGGGTATGATCCATTGGATCCCAATGGGAATATAGCAATCAAATGGGATGTCTTACAATGGAGTTCTAGTAGTTATGATGCAAGGGTATCGATAATCAACTACCAACTGTATAGGCATATTGAGACACCTGGTTGGAAGTTGAGCTGGACATGGCCCGGTGACGAGGTGATCTGGGACATGTGGGGAGCCTTGGCTCACGAACAAGGAAATTGCAGTGAGTTCAAGGGAGAACAACTCCCTTACTGTTGCGAGAAGACGCCATTGATCCTTGACCGAGGGCCCGGAACTCCGTTCAACAAGCAGGTGGCTAATTGCTGCAGGGACGGCCTGCTCACCTCCATGATACAAGACCCCAGTAAGCATGGGGCCATGTTCCAGATGAATGTGGGCACTGCTTCTAGTAACGTTTCAGACATGACCATGCCCAGAAATTTCAGCCTTGGGGTTCCTGGATATACCTGTGGAGATCCATTTCAGGTCCCACCCAGCAGGTTTCCAGAGGAAGGAGGCCGCCGTTGGACACAAGCTCTCATGACATGGAACGTGAGTTGTTCTTACTCGCAATTTCTAGCATCGACGGCCCCAACATGCTGCGTTTCTTTATCTGCATTCTACAACAGCACCATCGTCCCATGCCCCCAATGCAGCTGTGGCTGTGAAGGAATACCGGGCACCAAATGCGCCAAGCCTGGTGAAACACCATTGTTGTTGCCTCAGGGAGATGGACAGCAGCCGGATCTAGTGAGGTGCTCAAGGCACATGTGCCCAATCCGGGTGCACTGGCATGTGAAAACAAGTTACAGAGAGTATTGGAGGGTTAAGATCACAGTCACAAATCTGAATCTGGTGAAGAACTATTCTGCCTGGAACTTGGTGGTGCTGCACCCCAACTTGCAGAGCATTACACAGGTTTTCAGCTTCAACTACCGCTCTCTAAATGAGCATGGCACTATCAATGATACTGGGATGTTCTGGGGAATTCAGTACTACAATGAGCTGCTTCTGCAGGCAGGTGAGAGTGGGAATGTACAAACGGAGATGTTACTACACAAAGATCCAGGGATTTTCACTTTCAGAGAAGGATGGGCTTTTCCAAGAAAAATATCTTTCAATGGTGACCAATGTGTCATGCCCTCACCAGATGAATACCCAAGGCTCCCCAACACTGGCCCTTCGGCTACCCCACCAAGCCTTTGCATTATTTTGTTATTGTCATTGTCAGTTATAGTAATGCTGTAA 1296 48.23 MGWSWILIIQLNFLIGNADGYDPLDPNGNIAIKWDVLQWSSSSYDARVSIINYQLYRHIETPGWKLSWTWPGDEVIWDMWGALAHEQGNCSEFKGEQLPYCCEKTPLILDRGPGTPFNKQVANCCRDGLLTSMIQDPSKHGAMFQMNVGTASSNVSDMTMPRNFSLGVPGYTCGDPFQVPPSRFPEEGGRRWTQALMTWNVSCSYSQFLASTAPTCCVSLSAFYNSTIVPCPQCSCGCEGIPGTKCAKPGETPLLLPQGDGQQPDLVRCSRHMCPIRVHWHVKTSYREYWRVKITVTNLNLVKNYSAWNLVVLHPNLQSITQVFSFNYRSLNEHGTINDTGMFWGIQYYNELLLQAGESGNVQTEMLLHKDPGIFTFREGWAFPRKISFNGDQCVMPSPDEYPRLPNTGPSATPPSLCIILLLSLSVIVML* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20045655 20050279 - Vvi12g1128 Vvi12g1128 773651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1128 431 PANTHER PROTEIN COBRA 12 425 IPR006918 GO:0010215|GO:0031225
Vvi12g1128 431 SUPERFAMILY Carbohydrate-binding domain 28 92 IPR008965 GO:0030246
Vvi12g1128 431 Pfam COBRA-like protein 44 206 IPR006918 GO:0010215|GO:0031225
Vvi12g1128 431 PANTHER COBRA-LIKE PROTEIN 6 12 425 - -
Vvi12g1128 431 PIRSF COBRA 2 431 IPR006918 GO:0010215|GO:0031225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1128 - - vvi:100267982 874.004