Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1131 ATGGACGCTCACTCCAACTACCATCTTTTCGAGAGGCGCCCCATTGTCAAGTCGAAGACTCCCGCTGTCAAGTGGGTCAAAGAATGGGTGCCACAAGATCTTGTAGCAACTGGTGGGAAGTGCTTAGTTTATAAATGGGTCACGGAGGACACATTGAAGGCACTGAAAGAGAAGGCAAAAGAGCCACAGGCACCGGAACCAGAACCTGAACCAACTACTGAAGTTCTTTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACCTTTATTGATGCTGGGGCTTTGAGGAAGCATTCACATATCCATGGCGAGAGACAATATGTTTGCCATTATGAGGGGTGTGGAAAGAAATTTTTGGATAGTTCAAAGCTGAAAAGACACTTCCTGATTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAGGCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAAGAGAACTACCATATCTGCCCCTATCCAGATTGTGGAAAGAGATATGCTCATGAGTACAAGTTAAAGAACCACATCATGTCTCACCATGAAAAGAGTGTGATGGATGTGCCCAAGTATGTGCCGCCTGCAGAGAAGCTAACAAAGACTCCGAAGCCATCTGGAGGAGTTTATGGGTCTGCAGCATCTGACCGCCCTTATTCCTGTCCTTATGAAGGGTGTGAAAAATCCTACATCCATGAATACAAGCTGAAACTCCACTTGAGAAGAGAGCACCCTGGTCATATCTCAGATGAGAATGCTGAGAACGCCCAAGCTAATATTGATAATGAGCCCGATGAAGGCAGTGATCAAGATGCCTATGTTGGAAAACGTGGGAATGGCAAGAGTCAGAAAGCGAGCAAGGCCAAGTCAAGCTTGAAGATGCCTCCTTCAAAGGTTACACAGCGCAAAGCCTCAAATCCAGCTCCTGCCAACTTGAATGTAATTAAGAAACAGTGGCCAGTCAAAGAAGAAATTTATGAGGAAGAAGATAGTGAAGAAACAGAAGAGGACCGCGACAATGTTGAGGATGGATGGAGGTATGCTGAGAACAATGAGGATGACGACGAGGAGACAGAGTATGAGGACTAA 1116 45.25 MDAHSNYHLFERRPIVKSKTPAVKWVKEWVPQDLVATGGKCLVYKWVTEDTLKALKEKAKEPQAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIMSHHEKSVMDVPKYVPPAEKLTKTPKPSGGVYGSAASDRPYSCPYEGCEKSYIHEYKLKLHLRREHPGHISDENAENAQANIDNEPDEGSDQDAYVGKRGNGKSQKASKAKSSLKMPPSKVTQRKASNPAPANLNVIKKQWPVKEEIYEEEDSEETEEDRDNVEDGWRYAENNEDDDEETEYED* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20085226 20107699 - Vvi12g1131 Vvi12g1131 773654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1131 371 MobiDBLite consensus disorder prediction 293 321 - -
Vvi12g1131 371 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Vvi12g1131 371 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Vvi12g1131 371 Pfam Zinc finger, C2H2 type 228 253 IPR013087 -
Vvi12g1131 371 Gene3D Classic Zinc Finger 207 270 - -
Vvi12g1131 371 Gene3D Classic Zinc Finger 77 102 - -
Vvi12g1131 371 Gene3D Classic Zinc Finger 134 161 - -
Vvi12g1131 371 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Vvi12g1131 371 Gene3D Classic Zinc Finger 103 133 - -
Vvi12g1131 371 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Vvi12g1131 371 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 9 370 - -
Vvi12g1131 371 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Vvi12g1131 371 SMART c2h2final6 136 160 IPR013087 -
Vvi12g1131 371 SMART c2h2final6 166 190 IPR013087 -
Vvi12g1131 371 SMART c2h2final6 228 253 IPR013087 -
Vvi12g1131 371 SMART c2h2final6 77 101 IPR013087 -
Vvi12g1131 371 SMART c2h2final6 106 130 IPR013087 -
Vvi12g1131 371 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Vvi12g1131 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Vvi12g1131 371 MobiDBLite consensus disorder prediction 357 371 - -
Vvi12g1131 371 MobiDBLite consensus disorder prediction 205 224 - -
Vvi12g1131 371 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Vvi12g1131 371 ProSitePatterns Zinc finger C2H2 type domain signature. 230 253 IPR013087 -
Vvi12g1131 371 MobiDBLite consensus disorder prediction 334 348 - -
Vvi12g1131 371 PANTHER BNAA03G13270D PROTEIN 9 370 - -
Vvi12g1131 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Vvi12g1131 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Vvi12g1131 371 Gene3D Classic Zinc Finger 162 191 - -
Vvi12g1131 371 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Vvi12g1131 371 MobiDBLite consensus disorder prediction 268 371 - -
Vvi12g1131 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Vvi12g1131 371 SUPERFAMILY beta-beta-alpha zinc fingers 224 251 IPR036236 -
Vvi12g1131 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 258 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13770 PF00096 zf-C2H2 0.006 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1131 - - vvi:100268146 695.271