Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1133 ATGGAAATAGATGAAGAGGTGGATCTTCATCGCAGCAGATGGTGGTCCCTTTTGTTGGGCGGGCAGGTGGTGGAGGAGGACCATCCCACCCAGCCCCATTCATGGGCTCCAGCCCCAGCCAACCTGGCCTCCTTCGAAATATGGATGCCACCACCTCTTCTTCTTCTCCAAACTCCACTTCTTCTGTCAGTGGTAATAGCTCCTCCACTACTCCTTCTCCGGCTCCGCCGCCGCAGCTGGTTGACGCCTCCCTCGCCATCGCTACCAGATCCGAGGCTGACCGGAGCCGATCGGGCGGCGCAGCTGACAATTGGGACGAATCCTCCGGCGAAGAGATCCACCAAGGACCGCCACACCAAGGTCGACGGCCGAGGGCGGCGCATCCGAATGCCGGCCACCTGTGCGGCTAGGGTTTTTCAGTTGACGAGAGAGTTGGGGCACAAGTCCGACGGGGAAACCATCGAATGGCTGCTGCAGCAGGCGGAGCCTGCGATTATCGCTGCCACCGGGACTGGAACCATCCCGGCTAACTTCTCCACGCTCAACGTCTCCCTCCGGAGCAGCGGTTCGACCATCTCGGCACCTCCGTCGAAATCGGCACCGCACTCGTTTCACGGCGCGTTAGCCCTAGCTCACCACCCTCACTACGAGGAAGGGTTTCCTCACACCGCTATGCTAGGGTTTCATCAGCAGCCACATTTGTTGTCAGCAGATCAGATTGGTGACGCTCTCCCGGGCGCACTGGAAAACACTACTACTGCATCCGAGGCCGCCTCAGGCAATGGAAACAATAAAACCACCTCACTACACATGGGCAAGTCTCCCCAGGAGCAGCAGCCAGGCAGCACATTCTGGATGCTGCCTCCCCACATGTGGGCTCTCCCCACCGCAGCGCCAACCACAACCGGCAACACCCTCCAAGCCCCTCTACATTTCATGCCGAGGTTCAACCTGGCCAGCAACCTCGACTTCCAAGGCGGAAGAGCGAACCCTCTGCAATTAGGGTCCATGTTGATGCAGCAGCACCCCTCTCAGCACCTGGGCACCCGCACCAGCCTCAAGGAACAGACAGTGGAGATGAAGATCCAAACAGCTCACAATAGTAGTAACATTCCATTCCAAAGTAGCTTCTTCTGGCTAGTCAGGTTTGAAGATATGGGTTGA 1164 58.25 MEIDEEVDLHRSRWWSLLLGGQVVEEDHPTQPHSWAPAPANLASFEIWMPPPLLLLQTPLLLSVVIAPPLLLLRLRRRSWLTPPSPSLPDPRLTGADRAAQLTIGTNPPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTISAPPSKSAPHSFHGALALAHHPHYEEGFPHTAMLGFHQQPHLLSADQIGDALPGALENTTTASEAASGNGNNKTTSLHMGKSPQEQQPGSTFWMLPPHMWALPTAAPTTTGNTLQAPLHFMPRFNLASNLDFQGGRANPLQLGSMLMQQHPSQHLGTRTSLKEQTVEMKIQTAHNSSNIPFQSSFFWLVRFEDMG* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20149669 20152476 + Vvi12g1133 Vvi12g1133 773656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1133 387 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 99 240 IPR005333 GO:0003700
Vvi12g1133 387 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 289 349 IPR005333 GO:0003700
Vvi12g1133 387 Pfam TCP family transcription factor 113 229 IPR017887 -
Vvi12g1133 387 ProSiteProfiles TCP domain profile. 114 168 IPR017887 -
Vvi12g1133 387 MobiDBLite consensus disorder prediction 252 280 - -
Vvi12g1133 387 PANTHER TRANSCRIPTION FACTOR TCP8 289 349 - -
Vvi12g1133 387 PANTHER TRANSCRIPTION FACTOR TCP8 99 240 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13771 PF03634 TCP 8.80E-38 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1133 - - vvi:100243917 468.774