Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1160 ATGGCTTCTTTCATTGCTCTTGCACTAGTCCTTTTCCTCCGGCTGAGTACCCCATCTTTTTCATCTTCTCTGAGCAGTGATTTTCACGCTTTGGTGGCTCTAAAACGGGGATTTGCGTTCTCTGATCCGGGTTTGAGCTCATGGAACGTCTCGACTCTGAGCTCGGTCTGCTGGTGGAGAGGAATTCAATGCGCTCATGGGCGGGTTGTGGGACTGGACTTGACAGATATGAACCTCTGCGGCTCAGTTTCTCCAGACATTTCCCGCCTTGATCAGCTCAGCAACATCTCCATTTCCGGAAACAACTTCACTGGCCCGATAGAGATTCAGAATTTGAGCTCCCTCCGGTGGCTCAACATCTCCAACAACCAGTTCAGCGGCAGCTTGAATTGGAGCTTTTCGACAATGGAAGACTTGGAAGTATTAGACGCATACAACAACAACTTCACTGCTCTTCTCCCTCAGGGCGTCTTGAGCTTGAAGAAGCTCAGGTACTTAGACCTTGGGGGCAACTTCTTTTATGGGAAAATCCCAAAAATCTATGGAGGCCTGGCCGCCCTCGAGTACTTATCGCTTGCAGGCAACGATCTTCGCGGAAAAATACCTATTGAGTTGGGGAATCTCACAAGTTTGAAGGAAATTTACTTGGGGTACTACAATTCTTTCACAGACGGTATTCCAAGTGAGTTTGGCAAGCTGATCAACCTGGTTCACATGGATCTTTCGAGCTGTGAGCTAGACGGGCACATCCCGGAAGAGCTCGGGAACTTGAAGTCCCTCAACACCCTCTTTCTCCACATCAATCAGCTGTCTGGTTCGATCCCGAATCGTCTCGGTAATCTAACAAGCTTGGTGAACCTTGATCTCTCCAACAACGCCCTCACAGGTGAAATTCCCTTAGAGTTGAGTAATCTCCTCCAGCTGAGCTTGCTGAACCTGTTCTTGAACCGCCTCCATGGCTCCATTCCGGACTTCGTTGCAGAGCTCCCCAATCTGCAGACACTAGGCCTATGGATGAATAACTTCACTGGCATCATTCCCGAACGATTAGGCCAGAATGGGAGGCTCCAGGAGCTCGATCTCTCCTCCAACAAGCTCACCGGCGCCATCCCCGGCAACCTTTGCTCGTCCAACCAGCTTCGCATACTAATTCTTCTCAAGAATTTCCTCTTCGGGCCAATTCCGGAGGGGTTGGGGAGGTGTTCTAGTCTCACCAGGGTGAGGCTTGGGCAGAACTATTTGAATGGCAGCATCCCTGGTGGATTCATATACCTGCCTCTGCTCAATCTCATGGAGTTGCAGAACAATTATATATCCGGGACGCTGCCTGAAAACCATAACAGTTCATTCATTCCTGAGAAACTCGGGGAGCTGAATTTGTCAAACAATCTTCTTTCAGGACGGCTGCCATCCTCGCTATCGAATTTCACTTCTCTGCAGATACTTTTGCTGGGTGGGAATCAGTTTTCGGGTCCCATACCTCCCTCCATTGGCGAGCTGAAGCAGGTGCTGAAGCTTGATCTAAGTAGGAACTCGCTTTCCGGTGAAATCCCACTGGAGATTGGGGCTTGTTTTCATCTGACTTACCTTGATATCAGCCAGAACAACCTCTCAGGGCCAATCCCATCTGAGTCGATTGGATCCATGAAGAGCCTCACTATAGCTGATTTTTCCTTCAATGAATTGTCCGGGAAACTGCCTGAATCAGGCCAATTCGCCTTCTTCAATGCCTCATCATACGCCGGCAATCCTCACCTCTGCGGCTCTCTCCTCAACAATCCATGCAATTTCACCGCCATAAACGGCACGCCGGGAAAACCACCGGCCGACTTCAAGCTCATCTTCGCACTAGGGATCGTCTACCACGGAAAAATGCCCACCGGCGCCGAAGTCGCAGTCAAAAAACTCCTTGGATTCGGCCCCAACAGCCATGATCACGGCTTTCGGGCTGAGATCCAAACCCTAGGGAACATCAGGCATCGGAACATCGTCCGATTAATCGCATTCTGCTCGAACAAGGAGACGAATCTTCTCGTATACGAGTACATGAAAAATGGGAGTCTAGGAGAGGCACTGCATGGGAAAAAGGGCGGATTCCTGGGGTGGAATCTGAGGTACAAAATCGCGGTCGACGCTGCTAAAGGATTATGCTACCTCCACCATGACTGCTCGCCCTTGATCGTTCATCGGGATGTGAAATCGAACAACATTCTCTTGAATTCCAGTTTCGAAGCGCACGTCGCCGATTTTGGGCTCGCCAAGTTCTTGATCGACGGCGGCGCGTCGGAATGCATGTCTGCAATTGCAGGATCTTATGGCTACATCGCACCAGAATATGCATACACTCTAAGAGTCGATGAAAAAAGCGATGTATATAGTTTTGGAGTTGTATTGTTAGAGCTCATCACGGGACGTCGCCCTGTGGGTGATTTTGGAGAAGGTGTGGACATTGTACAATGGGCAAAAAGAACAACTAACTGTTGCAAAGAAAATGTTATTCGAATTGTTGATCCAAGGTTAGCGACAATACCCAGAAATGAAGCGACGCATTTATTCTTCATAGCATTGTTATGCATTGAAGAGAACAGTGTTGAGCGGCCGACAATGAGAGAGGTGGTTCAAATGCTATCCGAGTCCCATCGTAACTCCCCCGACAACAAAACTTCATCATCATCAATTGTTCTTTAG 2688 49.07 MASFIALALVLFLRLSTPSFSSSLSSDFHALVALKRGFAFSDPGLSSWNVSTLSSVCWWRGIQCAHGRVVGLDLTDMNLCGSVSPDISRLDQLSNISISGNNFTGPIEIQNLSSLRWLNISNNQFSGSLNWSFSTMEDLEVLDAYNNNFTALLPQGVLSLKKLRYLDLGGNFFYGKIPKIYGGLAALEYLSLAGNDLRGKIPIELGNLTSLKEIYLGYYNSFTDGIPSEFGKLINLVHMDLSSCELDGHIPEELGNLKSLNTLFLHINQLSGSIPNRLGNLTSLVNLDLSNNALTGEIPLELSNLLQLSLLNLFLNRLHGSIPDFVAELPNLQTLGLWMNNFTGIIPERLGQNGRLQELDLSSNKLTGAIPGNLCSSNQLRILILLKNFLFGPIPEGLGRCSSLTRVRLGQNYLNGSIPGGFIYLPLLNLMELQNNYISGTLPENHNSSFIPEKLGELNLSNNLLSGRLPSSLSNFTSLQILLLGGNQFSGPIPPSIGELKQVLKLDLSRNSLSGEIPLEIGACFHLTYLDISQNNLSGPIPSESIGSMKSLTIADFSFNELSGKLPESGQFAFFNASSYAGNPHLCGSLLNNPCNFTAINGTPGKPPADFKLIFALGIVYHGKMPTGAEVAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLIAFCSNKETNLLVYEYMKNGSLGEALHGKKGGFLGWNLRYKIAVDAAKGLCYLHHDCSPLIVHRDVKSNNILLNSSFEAHVADFGLAKFLIDGGASECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELITGRRPVGDFGEGVDIVQWAKRTTNCCKENVIRIVDPRLATIPRNEATHLFFIALLCIEENSVERPTMREVVQMLSESHRNSPDNKTSSSSIVL* 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20631239 20635876 - Vvi12g1160 Vvi12g1160 773683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1160 895 Pfam Leucine Rich Repeat 114 134 IPR001611 GO:0005515
Vvi12g1160 895 Gene3D Ribonuclease Inhibitor 217 374 IPR032675 -
Vvi12g1160 895 ProSiteProfiles Protein kinase domain profile. 606 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1160 895 Gene3D Transferase(Phosphotransferase) domain 1 684 893 - -
Vvi12g1160 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 727 739 IPR008271 GO:0004672|GO:0006468
Vvi12g1160 895 SUPERFAMILY Protein kinase-like (PK-like) 617 876 IPR011009 -
Vvi12g1160 895 Gene3D Ribonuclease Inhibitor 452 597 IPR032675 -
Vvi12g1160 895 Pfam Protein tyrosine and serine/threonine kinase 618 876 IPR001245 GO:0004672|GO:0006468
Vvi12g1160 895 SUPERFAMILY L domain-like 274 598 - -
Vvi12g1160 895 SUPERFAMILY RNI-like 72 368 - -
Vvi12g1160 895 Gene3D Ribonuclease Inhibitor 133 216 IPR032675 -
Vvi12g1160 895 MobiDBLite consensus disorder prediction 876 895 - -
Vvi12g1160 895 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Vvi12g1160 895 Gene3D Ribonuclease Inhibitor 375 451 IPR032675 -
Vvi12g1160 895 Gene3D Ribonuclease Inhibitor 25 132 IPR032675 -
Vvi12g1160 895 SMART LRR_typ_2 500 524 IPR003591 -
Vvi12g1160 895 SMART LRR_typ_2 281 305 IPR003591 -
Vvi12g1160 895 SMART LRR_typ_2 354 377 IPR003591 -
Vvi12g1160 895 SMART LRR_typ_2 184 208 IPR003591 -
Vvi12g1160 895 SMART LRR_typ_2 136 159 IPR003591 -
Vvi12g1160 895 SMART LRR_typ_2 112 135 IPR003591 -
Vvi12g1160 895 SMART LRR_typ_2 233 257 IPR003591 -
Vvi12g1160 895 SMART LRR_typ_2 329 353 IPR003591 -
Vvi12g1160 895 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 545 619 - -
Vvi12g1160 895 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 7 543 - -
Vvi12g1160 895 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 618 885 - -
Vvi12g1160 895 SMART serkin_6 611 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1160 895 Pfam Leucine rich repeat 330 387 IPR001611 GO:0005515
Vvi12g1160 895 Gene3D Phosphorylase Kinase; domain 1 616 683 - -
Vvi12g1160 895 PANTHER UNNAMED PRODUCT 7 543 - -
Vvi12g1160 895 PANTHER UNNAMED PRODUCT 618 885 - -
Vvi12g1160 895 PANTHER UNNAMED PRODUCT 545 619 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76098 PF07714 PK_Tyr_Ser-Thr 2.70E-41 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1160 - - pmum:103319018 1349.34