Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1173 ATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGGATTCTGGGACATGTACGATCCCGAGGGATACTCTCTTTGGTTCTGTGATTACAAATACAATGCCGAGAATACCGTCTCATTCGTAACTCTGATCAAGGTTGATGGATTCCTTCAGCGGATGGATCTGGCACACAAGTATGCTTTTGGGAAGATGCTTGTAATCGGCTCAGAGGCCCCATTCAAGGTGAAAGGGCTGTGGCTTTTCCGCGGGCAAGAGATACCTCAATTTATAATTGATGAGTGCTATGACATGGAACACTATGAGTGGAAGAAGGTTGACATCTCGGATGAGGCCCAAAAGGGGCGTGTGATTCAGATGATAGAAGATCAGGAGCCTTTTGAGGGAGAGGCTCTTCTGGATGCCAAGTGCTTCAAGTGA 450 45.78 MILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNAENTVSFVTLIKVDGFLQRMDLAHKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFIIDECYDMEHYEWKKVDISDEAQKGRVIQMIEDQEPFEGEALLDAKCFK* 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20919066 20920387 - Vvi12g1173 Vvi12g1173 773696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1173 149 Pfam Elongation factor 1 gamma, conserved domain 1 96 IPR001662 GO:0003746|GO:0006414
Vvi12g1173 149 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 149 IPR044628 GO:0004364
Vvi12g1173 149 PANTHER - 1 149 - -
Vvi12g1173 149 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 1 149 IPR001662 GO:0003746|GO:0006414
Vvi12g1173 149 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 1 149 IPR036433 GO:0003746|GO:0006414
Vvi12g1173 149 SMART EF1G_2 1 96 IPR001662 GO:0003746|GO:0006414
Vvi12g1173 149 SUPERFAMILY eEF1-gamma domain 2 149 IPR036433 GO:0003746|GO:0006414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1173 K03233 - vvi:100264325 296.204