Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi12g1174 | ATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGGATTCTGGGACATGTACGATCCCGAGGGATACTCTCTTTGGTTCTGTGATTACAAATACAATGACGAGAATACCGTCTCATTCGTAACTCTGAACAAGGTTGGTGGATTCCTTCAGCGGATGGATCTGGCACGCAAGTATGCTTTTGGGAAGATGCTTGTAATCGGCTCAGAGGCCCCATTCAAGGTGAAGGGGCTGTGGCTTTTCCGCGGGCAAGAGATACCTCAATTTATAATTGATGAGTGCTATGACATGGAACTCTATGAGTGGAAGAAGGTTGACATCTCGGATGAGGCCCAAAAGGAGCGTGTGAATCAGATGATAGAAGATCAGGAGCCTTTTGAGGGAGAGGCTCTTCTGGATGCCAAGTGCTTCAAGAAGTTCAAGGGATCTGCCTCTGACTATATAAGAGGAAGGAGACCAATCTGCCCAATAGATTCATCTCATTGTATGATTCTTAGTCCGGGCAGAGATACCGATTTGTCATGCCAGGCAGAAACAACACTCCTATGCGTAGGGTCATGGGATAATAATCATGACGAAGGCATGGTGAATTCATGGAGGTTGGAAAAGTCACCGAGTATGGATGGCACTTGCAATCACTTGGAAGTTGCTGAATATGATGCAGAAATCTATCAGTACTTTTGGCCTTTGACAGATGCAACCAAGCAATACCTTGCTAGTCGTTACAAAGACACAACCAAGTTTCAGGAAGAGGCGATGGCCTTACCCCTTGTCAAGATCGAAGCAGTTTTGTCCAGTGATGATCTCCAGGTTGCATCAGAGGATGCAGTGTATGATTTTGTGTCGAAGTGGGCCTGGGCTCAGTACCCAAAATTGGAGGAGCGACATGAAATCCTTGGTACGCGCCTAGGCTGCTTCATCCAGTTCTCCTATGTGACATGCAGAAAGCTTAAGAAGGTTCTAACCTGCAATGACTTTGATCAAGACCTTACATCCAAGGCTGTGCTGGAAGCTCCATTTTTCAAGGCCGATGCCCCTCATCGGCAGCGAGGCCTGGCTGCAGAGGACACTGCCCTCATCTACCATTGCTTCGTGGAGCGGGCCTACAAGTATCGTTCGGTCAAGGTTGTGGAGTTTGAATTTCCTCGACAGCCAGAGAAAGTAGAGAGGGATGATGGAAGCTTCGAGCCGGAGATCTCTGCAAATCCTGTTGTTGGTCTCTTCGATTTCTCTGCAATTCTTTTCAGTTTGAGGAGGCTGCAATTGCTGCGTTGA | 1308 | 47.02 | MILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFIIDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFKKFKGSASDYIRGRRPICPIDSSHCMILSPGRDTDLSCQAETTLLCVGSWDNNHDEGMVNSWRLEKSPSMDGTCNHLEVAEYDAEIYQYFWPLTDATKQYLASRYKDTTKFQEEAMALPLVKIEAVLSSDDLQVASEDAVYDFVSKWAWAQYPKLEERHEILGTRLGCFIQFSYVTCRKLKKVLTCNDFDQDLTSKAVLEAPFFKADAPHRQRGLAAEDTALIYHCFVERAYKYRSVKVVEFEFPRQPEKVERDDGSFEPEISANPVVGLFDFSAILFSLRRLQLLR* | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 20920386 | 20939460 | - | Vvi12g1174 | Vvi12g1174 | 773697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi12g1174 | 435 | SMART | EF1G_2 | 1 | 96 | IPR001662 | GO:0003746|GO:0006414 | |
Vvi12g1174 | 435 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 1 | 149 | IPR001662 | GO:0003746|GO:0006414 | |
Vvi12g1174 | 435 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 1 | 149 | - | - | |
Vvi12g1174 | 435 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 250 | 391 | - | - | |
Vvi12g1174 | 435 | SUPERFAMILY | eEF1-gamma domain | 2 | 149 | IPR036433 | GO:0003746|GO:0006414 | |
Vvi12g1174 | 435 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 1 | 149 | IPR036433 | GO:0003746|GO:0006414 | |
Vvi12g1174 | 435 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 250 | 391 | IPR044628 | GO:0004364 | |
Vvi12g1174 | 435 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 1 | 149 | IPR044628 | GO:0004364 | |
Vvi12g1174 | 435 | Pfam | Elongation factor 1 gamma, conserved domain | 1 | 96 | IPR001662 | GO:0003746|GO:0006414 | |
Vvi12g1174 | 435 | Pfam | BTB And C-terminal Kelch | 241 | 302 | IPR011705 | - | |
Vvi12g1174 | 435 | Gene3D | - | 248 | 351 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi12g1174 | K03233 | - | vvi:100264325 | 316.235 |