Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1174 ATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGGATTCTGGGACATGTACGATCCCGAGGGATACTCTCTTTGGTTCTGTGATTACAAATACAATGACGAGAATACCGTCTCATTCGTAACTCTGAACAAGGTTGGTGGATTCCTTCAGCGGATGGATCTGGCACGCAAGTATGCTTTTGGGAAGATGCTTGTAATCGGCTCAGAGGCCCCATTCAAGGTGAAGGGGCTGTGGCTTTTCCGCGGGCAAGAGATACCTCAATTTATAATTGATGAGTGCTATGACATGGAACTCTATGAGTGGAAGAAGGTTGACATCTCGGATGAGGCCCAAAAGGAGCGTGTGAATCAGATGATAGAAGATCAGGAGCCTTTTGAGGGAGAGGCTCTTCTGGATGCCAAGTGCTTCAAGAAGTTCAAGGGATCTGCCTCTGACTATATAAGAGGAAGGAGACCAATCTGCCCAATAGATTCATCTCATTGTATGATTCTTAGTCCGGGCAGAGATACCGATTTGTCATGCCAGGCAGAAACAACACTCCTATGCGTAGGGTCATGGGATAATAATCATGACGAAGGCATGGTGAATTCATGGAGGTTGGAAAAGTCACCGAGTATGGATGGCACTTGCAATCACTTGGAAGTTGCTGAATATGATGCAGAAATCTATCAGTACTTTTGGCCTTTGACAGATGCAACCAAGCAATACCTTGCTAGTCGTTACAAAGACACAACCAAGTTTCAGGAAGAGGCGATGGCCTTACCCCTTGTCAAGATCGAAGCAGTTTTGTCCAGTGATGATCTCCAGGTTGCATCAGAGGATGCAGTGTATGATTTTGTGTCGAAGTGGGCCTGGGCTCAGTACCCAAAATTGGAGGAGCGACATGAAATCCTTGGTACGCGCCTAGGCTGCTTCATCCAGTTCTCCTATGTGACATGCAGAAAGCTTAAGAAGGTTCTAACCTGCAATGACTTTGATCAAGACCTTACATCCAAGGCTGTGCTGGAAGCTCCATTTTTCAAGGCCGATGCCCCTCATCGGCAGCGAGGCCTGGCTGCAGAGGACACTGCCCTCATCTACCATTGCTTCGTGGAGCGGGCCTACAAGTATCGTTCGGTCAAGGTTGTGGAGTTTGAATTTCCTCGACAGCCAGAGAAAGTAGAGAGGGATGATGGAAGCTTCGAGCCGGAGATCTCTGCAAATCCTGTTGTTGGTCTCTTCGATTTCTCTGCAATTCTTTTCAGTTTGAGGAGGCTGCAATTGCTGCGTTGA 1308 47.02 MILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFIIDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFKKFKGSASDYIRGRRPICPIDSSHCMILSPGRDTDLSCQAETTLLCVGSWDNNHDEGMVNSWRLEKSPSMDGTCNHLEVAEYDAEIYQYFWPLTDATKQYLASRYKDTTKFQEEAMALPLVKIEAVLSSDDLQVASEDAVYDFVSKWAWAQYPKLEERHEILGTRLGCFIQFSYVTCRKLKKVLTCNDFDQDLTSKAVLEAPFFKADAPHRQRGLAAEDTALIYHCFVERAYKYRSVKVVEFEFPRQPEKVERDDGSFEPEISANPVVGLFDFSAILFSLRRLQLLR* 436
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 20920386 20939460 - Vvi12g1174 Vvi12g1174 773697
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1174 435 SMART EF1G_2 1 96 IPR001662 GO:0003746|GO:0006414
Vvi12g1174 435 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 1 149 IPR001662 GO:0003746|GO:0006414
Vvi12g1174 435 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 149 - -
Vvi12g1174 435 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 250 391 - -
Vvi12g1174 435 SUPERFAMILY eEF1-gamma domain 2 149 IPR036433 GO:0003746|GO:0006414
Vvi12g1174 435 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 1 149 IPR036433 GO:0003746|GO:0006414
Vvi12g1174 435 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 250 391 IPR044628 GO:0004364
Vvi12g1174 435 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 149 IPR044628 GO:0004364
Vvi12g1174 435 Pfam Elongation factor 1 gamma, conserved domain 1 96 IPR001662 GO:0003746|GO:0006414
Vvi12g1174 435 Pfam BTB And C-terminal Kelch 241 302 IPR011705 -
Vvi12g1174 435 Gene3D - 248 351 - -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1174 K03233 - vvi:100264325 316.235