Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1180 ATGGGCTGCATTTGCTCAAAAGGAAGTTCTGTCAACGAGTATGTTGAGAAGAATGCTAGGGACAAAGAATTGAGCAAAAAATCGTCTAAGCGCCTTGTTGCTTCCTCAAGGAGAGAGGGAGTTGTAGTGGAGGGTTATGGGGGAAGCAATGATGCAACCGCCCGGCTGATACCGACTCAATCAGCCGAGGACAACGCGGCATCCACCCCAGTTTCATGGGATAAGAGGCAGAAGAAATCAATGGCTATTGACAATTCCACGAGGGCCGCGGTTCAAAAACCCTCAACAATGGAAGTTGGGATGAATGCTGGACAACCCCAGATGACTAGGATTGTCAGCATGGGAAACGGGGTTGAAGCAGCTCAAGCTGCTGCTGGGTGGCCATCTTGGCTGACTGCAGTGGCTGCAGAGGCCATCGATGGGTGGGTGCCCCGAAAGGCTGACTCATTTGAGAGGTTGGACAAGATTGGACAAGGAACTTACAGCAGTGTGTACAAGGCACGTGACCTTGAGACTGGAAAAACCGTTGCATTGAAGAAGGTGAGGTTTGCAAACATGGACCCAGAAAGTGTTCGGTTTATGGCAAGAGAAATCCATATTCTGCGTAGGCTTGATCACCCAAATGTCATGAAGCTTGAAGGTCTGATCACTTCAAGGATGTCTGGTAGTTTATATCTTGTATTTGAATATATGGACCATGATCTTGCTGGACTTGCATCATCACCCAAGATCAAGTTTACTGAACCGCAGATAAAATGTTATATGCAACAGCTACTTCGTGGACTTGAACACTGCCACAGTCGTGGGGTTCTTCACCGTGACATCAAAGGTTCAAACCTTCTTATTGATAATAATGGAAATCTCAAGATTGGTGATTTTGGGCTGGCGACATTTTTCCAACCATACCAAAAGCAGCCTCTAACGAGTCGTGTAGTTACTTTGTGGTACCGGCCACCTGAGCTTTTGCTTGGTGCTACATCATATGGAGTTGCTGTGGATTTGTGGAGTGCTGGTTGCATTCTTGCTGAACTGTATGCAGGAAAGCCCATCATGCAAGGAAGAACAGAGGTGGAGCAACTGCATAGGATCTTCAAACTCTGTGGCTCACCTTCTGAAGAGTATTGGAAGAGAGCAAAACTTCCACATGCAACCATTTTCAAACCTCAGCATCCTTACAGGCGTTGTGTTGCTGAAACTTTTAGTGACTTCCCTTCACCAGCCTTGTCCCTTATGGATGTCCTTCTTGCAATAGAGCCTGAGCGCCGGGGATCAGCTTCTTCTGCACTTCATAATGAGTTCTTCACAACAAAGCCTCTTCCCTGTGACACATCAAATTTGCCCAAGTACCCACCAAGCAAGGAGTTCGATGCCAAGCTTCGAGAAGAGGAAGCTAGAAGGCGAAGAGCAGCTGGCAGTAAAGGGCGTGGACACGAGTCTACCAGAAAGGTTTCTAGAGAATCTAAAGCAGTGCCAGCACCAGATGCCAATGCTGAGTTGCAGGTGTCCATACAGAAGCGTCGAGAGCAATCAAACCCCAAAAGCAAAAGCGAAAAGTTCATCCCAGAAGAGGATGGTGGGTCTGGCTTCCCCATTGAGCCTACCAAAGGGACAACAAGGAATGGTTTCTCCCACTCTGGCAAGTCAATTCACCCCACTGCATTTGGATCTGCAAGAAACATGGATGTGAATGAGGATGAGGCTCAAATGGGTCCTGGTCGTGGGTCTAATTCTTCAAGGAATGGTGCAGAATTGAGGATACAGAAATCCTACTCACATAGGGGAGGATCCCAACTGTCCATGTTTTCTGGGTCAGTTGCAGTTCAAGGCTCTTCACGGTTTGACAATGACAGAGAGAATGGAATGAATCGGCACTGGCCAGAGGAGCGCTGCAATGCCAGATATAACGAGCTGGGTGGTGCTGAGTCCTCGGAGAAGCACCAGTGGTCTCACCATTTGCTGGACAGGCCAAAGTCTTCTCACAAGAAGGATGAACAACCCTCTGAAAAGGGGTCATCAATGGGTTACGCCCCAAAGAAGAATCGGATTCACTACTCAGGACCATTGATGCCTCCTGGGGGAAATCTTGAGGAAATGCTCAAAGAGCATGAGAAACAAATCCAACTTGCTGTCCGCAAAGCTCGTCTTGACAAAGTGAAGACCAAGAAAGCATACAATGACAACGGACAAACTGAATCGCTACTTCCCCATGGGAGAAACAACAGGTAA 2226 47.8 MGCICSKGSSVNEYVEKNARDKELSKKSSKRLVASSRREGVVVEGYGGSNDATARLIPTQSAEDNAASTPVSWDKRQKKSMAIDNSTRAAVQKPSTMEVGMNAGQPQMTRIVSMGNGVEAAQAAAGWPSWLTAVAAEAIDGWVPRKADSFERLDKIGQGTYSSVYKARDLETGKTVALKKVRFANMDPESVRFMAREIHILRRLDHPNVMKLEGLITSRMSGSLYLVFEYMDHDLAGLASSPKIKFTEPQIKCYMQQLLRGLEHCHSRGVLHRDIKGSNLLIDNNGNLKIGDFGLATFFQPYQKQPLTSRVVTLWYRPPELLLGATSYGVAVDLWSAGCILAELYAGKPIMQGRTEVEQLHRIFKLCGSPSEEYWKRAKLPHATIFKPQHPYRRCVAETFSDFPSPALSLMDVLLAIEPERRGSASSALHNEFFTTKPLPCDTSNLPKYPPSKEFDAKLREEEARRRRAAGSKGRGHESTRKVSRESKAVPAPDANAELQVSIQKRREQSNPKSKSEKFIPEEDGGSGFPIEPTKGTTRNGFSHSGKSIHPTAFGSARNMDVNEDEAQMGPGRGSNSSRNGAELRIQKSYSHRGGSQLSMFSGSVAVQGSSRFDNDRENGMNRHWPEERCNARYNELGGAESSEKHQWSHHLLDRPKSSHKKDEQPSEKGSSMGYAPKKNRIHYSGPLMPPGGNLEEMLKEHEKQIQLAVRKARLDKVKTKKAYNDNGQTESLLPHGRNNR* 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20975395 20981040 - Vvi12g1180 Vvi12g1180 773703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1180 741 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524
Vvi12g1180 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Vvi12g1180 741 Gene3D Phosphorylase Kinase; domain 1 137 232 - -
Vvi12g1180 741 PANTHER CELL DIVISION PROTEIN KINASE 99 717 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 725 741 - -
Vvi12g1180 741 PANTHER KINASE CDK9, PUTATIVE-RELATED 99 717 - -
Vvi12g1180 741 Pfam Protein kinase domain 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1180 741 MobiDBLite consensus disorder prediction 58 90 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 58 75 - -
Vvi12g1180 741 ProSiteProfiles Protein kinase domain profile. 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1180 741 Gene3D Transferase(Phosphotransferase) domain 1 233 473 - -
Vvi12g1180 741 SUPERFAMILY Protein kinase-like (PK-like) 144 441 IPR011009 -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 440 584 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 608 695 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 570 584 - -
Vvi12g1180 741 CDD STKc_CDK9_like 150 434 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 19 34 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 719 741 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 533 552 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 616 631 - -
Vvi12g1180 741 SMART serkin_6 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1180 741 MobiDBLite consensus disorder prediction 453 488 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 19 38 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 639 668 - -
Vvi12g1180 741 MobiDBLite consensus disorder prediction 508 522 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76100 PF00069 Pkinase 4.40E-70 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1180 - - vvi:100259144 1469.91