Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1217 ATGAGGGAGCCGTTGCTCGTTAGGAAGAGGTTGAATAGTACTTCGCAGATTGCAATTGTGGGAGCCAGCGTTTGTCCGATTGAGAGCTTGGACTACGAGATTGTGGAAAATGAACTTTTTAAGCAGGACTGGAGATCTAGAAAAAGGGTTCAGATATTTCAATATATTGTGCTCAAGTGGACGCTTGCCCTCCTTATCGGGTTAGGTACTGGGCTGGTTGGCTTCTTCAACAACCTTGCAGTTGAAAATATAGCCGGTTTCAAACTTTTACTCGCTAGCAATCTCATGCTTAAGGACAAGTATGGTCTGGCATTTGTAACATTTGCGGGTTGTAACATGGTTTTGGCAATTGCTGCGGCTGTCCTCTGTGCTTACATTGCCCCTTCAGCTGCGGGCTCTGGCATCCCTGAGGTGAAAGCATATCTCAATGGCATAGATGCTCATTCTATATTGGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCCATTCTTGGAGTGTCTGCTGGATTTGTTGTGGGTAAGGAAGGGCCCATGGTCCATACTGGCGCTTGCATAGCCTCTTTGCTTGGGCAGGGAGGATCCCGCAAATACCATTTGACATGGAAATGGCTCAGATACTTCAAAAATGACAGGGATCGTCGTGATTTGATTACCTGTGGTGCTGCAGCTGGTGTGGCTGCTGCTTTCCGTGCTCCAGTGGGTGGGGTCCTCTTTGCACTTGAAGAAGTAACTTCATGGTGGAGAAGTGCTCTTCTCTGGAGAACCTTTTTTACAACAGCTGTAGTAGCAGTGGTGTTGAGAGCCCTCATAGAATTTTGTCGGAGTGGCAAGTGTGGGTTATTTGGGCAAGGAGGTCTGATCATGTTTGATGTCAATTCGTCTCAAGCCACTTATGATACCCCTGATTTACTGACAGTCATATTCCTTGGAATTGTTGGTGGCATTTTTGGAAGCCTCTACAATTTTCTCGTGGATAAGGTCCTTCGTACGTATAGCATCTTCAATGAGCAAGGTCCTAAATTTCGGGTCCTGCTTGTCATTGTCATCTCCCTCCTGACATCTTGCTGCGCTTATGGTATTCCATGGCTGGCACAGTGCAAGCCTTGTCCAATTGAGCTGAAGAATGAGTGCCCCACCGTAGGCCGCTCTGGAAACTACAAGAACTTCCAATGTCAACCAGGCCATTACAATGACCTTGCCTCCCTCTTTCTCAACACCAATGATGATGCCATACGCAACCTATTCAGCAATGGCACCCAAAATGAATTCCAACTCTCCACCCTTGTCATTTTCTTTGCTGCTGTATACTGCCTTGGCATTATTACTTATGGCATTGCTGTTCCCTCGGGGCTATTTATCCCTGTCATACTTGCTGGAGCCTCCTATGGTCGCATTGTTGGGACAGTTGCTGGCTCTCTGACTAGTCTTGATGTGGGTCTCTTTTCACTCCTTGGAGCTGCCTCCTTCCTGGGTGGCACCATGAGAATGACAGTCTCCCTCTGTATCATTCTCCTGGAACTTACCAATGATCTGCTAATGCTCCCATTGATGATGCTGGTTCTCCTTATTTCAAAAACGGTTGCAGATTGTTTCAACAAGGGTGTCTATGACCAAATAGTGAGAATGAAGGGGTTTCCTTATATGGAAGCCCATGCAGAGCCATACATGAGGCACCTGGTCGCAAAGGATGTTGTTTCTGGTCCATTAATCACCTTTTCGAGCATTGAAAAGGTGGGAAATATACTACATGCTTTGAAGACAACAGGCCATCATGGGTTCCCTGTCATTGATGAACCGCCTTTCACAGATGCACCAGAGCTGTGTGGGCTTGTTTTGAAGTCTCATTTGCTGGTTTTACTCAAAGGGAAGAAGTTTTCAAAGACGAGGATGTTGGTCGGATCAGAAATCTTGAAAACATTTGAGGCGAATGATTTTGCTAAGGCAGGATCAGGCAAAGGAGTCAAACTGGAGGACCTGGACATCACAGCCGAGGAGATGGAGATGTATGTTGATCTACATCCTATCACCAATACATCCCCATACACAGTTGTGGAAACGATGTCTCTAGCAAAAGCTGCTGTCCTCTTTCGGGAACTAGGCCTTCGACATTTGTGTGTGGTGCCAAAGACTCATGCTAGGCCGCCGATTGTGGGAATTTTGACAAGGCACGACTTCATGCCGGGGCACATACGAGGGCTCTACCCTCATTTCAACTCTAGCAAGTAA 2229 46.61 MREPLLVRKRLNSTSQIAIVGASVCPIESLDYEIVENELFKQDWRSRKRVQIFQYIVLKWTLALLIGLGTGLVGFFNNLAVENIAGFKLLLASNLMLKDKYGLAFVTFAGCNMVLAIAAAVLCAYIAPSAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEVTSWWRSALLWRTFFTTAVVAVVLRALIEFCRSGKCGLFGQGGLIMFDVNSSQATYDTPDLLTVIFLGIVGGIFGSLYNFLVDKVLRTYSIFNEQGPKFRVLLVIVISLLTSCCAYGIPWLAQCKPCPIELKNECPTVGRSGNYKNFQCQPGHYNDLASLFLNTNDDAIRNLFSNGTQNEFQLSTLVIFFAAVYCLGIITYGIAVPSGLFIPVILAGASYGRIVGTVAGSLTSLDVGLFSLLGAASFLGGTMRMTVSLCIILLELTNDLLMLPLMMLVLLISKTVADCFNKGVYDQIVRMKGFPYMEAHAEPYMRHLVAKDVVSGPLITFSSIEKVGNILHALKTTGHHGFPVIDEPPFTDAPELCGLVLKSHLLVLLKGKKFSKTRMLVGSEILKTFEANDFAKAGSGKGVKLEDLDITAEEMEMYVDLHPITNTSPYTVVETMSLAKAAVLFRELGLRHLCVVPKTHARPPIVGILTRHDFMPGHIRGLYPHFNSSK* 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21812588 21820136 + Vvi12g1217 Vvi12g1217 773740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1217 742 PRINTS Chloride channel signature 128 145 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1217 742 PRINTS Chloride channel signature 159 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1217 742 PRINTS Chloride channel signature 223 242 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1217 742 PRINTS Chloride channel signature 448 468 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1217 742 PRINTS Chloride channel signature 480 496 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1217 742 PRINTS Chloride channel signature 498 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1217 742 PRINTS Chloride channel signature 536 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1217 742 Gene3D - 550 728 IPR046342 -
Vvi12g1217 742 Pfam Voltage gated chloride channel 116 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1217 742 SMART cbs_1 680 735 IPR000644 -
Vvi12g1217 742 SMART cbs_1 569 622 IPR000644 -
Vvi12g1217 742 Gene3D Clc chloride channel 51 549 - -
Vvi12g1217 742 CDD CBS_pair_voltage-gated_CLC_euk_bac 562 727 - -
Vvi12g1217 742 SUPERFAMILY Clc chloride channel 37 551 IPR014743 -
Vvi12g1217 742 Pfam CBS domain 678 726 IPR000644 -
Vvi12g1217 742 PRINTS Plant CLC chloride channel signature 33 41 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi12g1217 742 PRINTS Plant CLC chloride channel signature 244 252 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi12g1217 742 PRINTS Plant CLC chloride channel signature 258 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi12g1217 742 PRINTS Plant CLC chloride channel signature 276 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi12g1217 742 PRINTS Plant CLC chloride channel signature 400 416 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi12g1217 742 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 2 740 - -
Vvi12g1217 742 ProSiteProfiles CBS domain profile. 676 740 IPR000644 -
Vvi12g1217 742 CDD ClC_6_like 28 549 - -
Vvi12g1217 742 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 2 740 - -
Vvi12g1217 742 SUPERFAMILY CBS-domain pair 553 727 IPR046342 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1217 K05016 - vvi:100245380 1353.58