Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi12g1217 | ATGAGGGAGCCGTTGCTCGTTAGGAAGAGGTTGAATAGTACTTCGCAGATTGCAATTGTGGGAGCCAGCGTTTGTCCGATTGAGAGCTTGGACTACGAGATTGTGGAAAATGAACTTTTTAAGCAGGACTGGAGATCTAGAAAAAGGGTTCAGATATTTCAATATATTGTGCTCAAGTGGACGCTTGCCCTCCTTATCGGGTTAGGTACTGGGCTGGTTGGCTTCTTCAACAACCTTGCAGTTGAAAATATAGCCGGTTTCAAACTTTTACTCGCTAGCAATCTCATGCTTAAGGACAAGTATGGTCTGGCATTTGTAACATTTGCGGGTTGTAACATGGTTTTGGCAATTGCTGCGGCTGTCCTCTGTGCTTACATTGCCCCTTCAGCTGCGGGCTCTGGCATCCCTGAGGTGAAAGCATATCTCAATGGCATAGATGCTCATTCTATATTGGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCCATTCTTGGAGTGTCTGCTGGATTTGTTGTGGGTAAGGAAGGGCCCATGGTCCATACTGGCGCTTGCATAGCCTCTTTGCTTGGGCAGGGAGGATCCCGCAAATACCATTTGACATGGAAATGGCTCAGATACTTCAAAAATGACAGGGATCGTCGTGATTTGATTACCTGTGGTGCTGCAGCTGGTGTGGCTGCTGCTTTCCGTGCTCCAGTGGGTGGGGTCCTCTTTGCACTTGAAGAAGTAACTTCATGGTGGAGAAGTGCTCTTCTCTGGAGAACCTTTTTTACAACAGCTGTAGTAGCAGTGGTGTTGAGAGCCCTCATAGAATTTTGTCGGAGTGGCAAGTGTGGGTTATTTGGGCAAGGAGGTCTGATCATGTTTGATGTCAATTCGTCTCAAGCCACTTATGATACCCCTGATTTACTGACAGTCATATTCCTTGGAATTGTTGGTGGCATTTTTGGAAGCCTCTACAATTTTCTCGTGGATAAGGTCCTTCGTACGTATAGCATCTTCAATGAGCAAGGTCCTAAATTTCGGGTCCTGCTTGTCATTGTCATCTCCCTCCTGACATCTTGCTGCGCTTATGGTATTCCATGGCTGGCACAGTGCAAGCCTTGTCCAATTGAGCTGAAGAATGAGTGCCCCACCGTAGGCCGCTCTGGAAACTACAAGAACTTCCAATGTCAACCAGGCCATTACAATGACCTTGCCTCCCTCTTTCTCAACACCAATGATGATGCCATACGCAACCTATTCAGCAATGGCACCCAAAATGAATTCCAACTCTCCACCCTTGTCATTTTCTTTGCTGCTGTATACTGCCTTGGCATTATTACTTATGGCATTGCTGTTCCCTCGGGGCTATTTATCCCTGTCATACTTGCTGGAGCCTCCTATGGTCGCATTGTTGGGACAGTTGCTGGCTCTCTGACTAGTCTTGATGTGGGTCTCTTTTCACTCCTTGGAGCTGCCTCCTTCCTGGGTGGCACCATGAGAATGACAGTCTCCCTCTGTATCATTCTCCTGGAACTTACCAATGATCTGCTAATGCTCCCATTGATGATGCTGGTTCTCCTTATTTCAAAAACGGTTGCAGATTGTTTCAACAAGGGTGTCTATGACCAAATAGTGAGAATGAAGGGGTTTCCTTATATGGAAGCCCATGCAGAGCCATACATGAGGCACCTGGTCGCAAAGGATGTTGTTTCTGGTCCATTAATCACCTTTTCGAGCATTGAAAAGGTGGGAAATATACTACATGCTTTGAAGACAACAGGCCATCATGGGTTCCCTGTCATTGATGAACCGCCTTTCACAGATGCACCAGAGCTGTGTGGGCTTGTTTTGAAGTCTCATTTGCTGGTTTTACTCAAAGGGAAGAAGTTTTCAAAGACGAGGATGTTGGTCGGATCAGAAATCTTGAAAACATTTGAGGCGAATGATTTTGCTAAGGCAGGATCAGGCAAAGGAGTCAAACTGGAGGACCTGGACATCACAGCCGAGGAGATGGAGATGTATGTTGATCTACATCCTATCACCAATACATCCCCATACACAGTTGTGGAAACGATGTCTCTAGCAAAAGCTGCTGTCCTCTTTCGGGAACTAGGCCTTCGACATTTGTGTGTGGTGCCAAAGACTCATGCTAGGCCGCCGATTGTGGGAATTTTGACAAGGCACGACTTCATGCCGGGGCACATACGAGGGCTCTACCCTCATTTCAACTCTAGCAAGTAA | 2229 | 46.61 | MREPLLVRKRLNSTSQIAIVGASVCPIESLDYEIVENELFKQDWRSRKRVQIFQYIVLKWTLALLIGLGTGLVGFFNNLAVENIAGFKLLLASNLMLKDKYGLAFVTFAGCNMVLAIAAAVLCAYIAPSAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEVTSWWRSALLWRTFFTTAVVAVVLRALIEFCRSGKCGLFGQGGLIMFDVNSSQATYDTPDLLTVIFLGIVGGIFGSLYNFLVDKVLRTYSIFNEQGPKFRVLLVIVISLLTSCCAYGIPWLAQCKPCPIELKNECPTVGRSGNYKNFQCQPGHYNDLASLFLNTNDDAIRNLFSNGTQNEFQLSTLVIFFAAVYCLGIITYGIAVPSGLFIPVILAGASYGRIVGTVAGSLTSLDVGLFSLLGAASFLGGTMRMTVSLCIILLELTNDLLMLPLMMLVLLISKTVADCFNKGVYDQIVRMKGFPYMEAHAEPYMRHLVAKDVVSGPLITFSSIEKVGNILHALKTTGHHGFPVIDEPPFTDAPELCGLVLKSHLLVLLKGKKFSKTRMLVGSEILKTFEANDFAKAGSGKGVKLEDLDITAEEMEMYVDLHPITNTSPYTVVETMSLAKAAVLFRELGLRHLCVVPKTHARPPIVGILTRHDFMPGHIRGLYPHFNSSK* | 743 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 21812588 | 21820136 | + | Vvi12g1217 | Vvi12g1217 | 773740 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi12g1217 | 742 | PRINTS | Chloride channel signature | 128 | 145 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi12g1217 | 742 | PRINTS | Chloride channel signature | 159 | 178 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi12g1217 | 742 | PRINTS | Chloride channel signature | 223 | 242 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi12g1217 | 742 | PRINTS | Chloride channel signature | 448 | 468 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi12g1217 | 742 | PRINTS | Chloride channel signature | 480 | 496 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi12g1217 | 742 | PRINTS | Chloride channel signature | 498 | 517 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi12g1217 | 742 | PRINTS | Chloride channel signature | 536 | 550 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi12g1217 | 742 | Gene3D | - | 550 | 728 | IPR046342 | - | |
Vvi12g1217 | 742 | Pfam | Voltage gated chloride channel | 116 | 530 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi12g1217 | 742 | SMART | cbs_1 | 680 | 735 | IPR000644 | - | |
Vvi12g1217 | 742 | SMART | cbs_1 | 569 | 622 | IPR000644 | - | |
Vvi12g1217 | 742 | Gene3D | Clc chloride channel | 51 | 549 | - | - | |
Vvi12g1217 | 742 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 562 | 727 | - | - | |
Vvi12g1217 | 742 | SUPERFAMILY | Clc chloride channel | 37 | 551 | IPR014743 | - | |
Vvi12g1217 | 742 | Pfam | CBS domain | 678 | 726 | IPR000644 | - | |
Vvi12g1217 | 742 | PRINTS | Plant CLC chloride channel signature | 33 | 41 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vvi12g1217 | 742 | PRINTS | Plant CLC chloride channel signature | 244 | 252 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vvi12g1217 | 742 | PRINTS | Plant CLC chloride channel signature | 258 | 268 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vvi12g1217 | 742 | PRINTS | Plant CLC chloride channel signature | 276 | 283 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vvi12g1217 | 742 | PRINTS | Plant CLC chloride channel signature | 400 | 416 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vvi12g1217 | 742 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 2 | 740 | - | - | |
Vvi12g1217 | 742 | ProSiteProfiles | CBS domain profile. | 676 | 740 | IPR000644 | - | |
Vvi12g1217 | 742 | CDD | ClC_6_like | 28 | 549 | - | - | |
Vvi12g1217 | 742 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC-C | 2 | 740 | - | - | |
Vvi12g1217 | 742 | SUPERFAMILY | CBS-domain pair | 553 | 727 | IPR046342 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi12g1217 | K05016 | - | vvi:100245380 | 1353.58 |