Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1224 ATGGCGCTGGTAGCCTCGAATTATCCGTCAGGAGGACCTCATGCAGGAGCTCCTTGTGATGCTCTATACAAGGAACTGTGGCATGCCTGTGCTGGACCCCTGGTAACTGTTCCCCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAAGCATCAACGACACATCAAGGGTTAGACCAGCAAATGCCCTCATTCAATCTGCCATCTAAAATTCTTTGCAAAGTAGTTCATGTTCAACTTCGGGCAGAACCAGAAACTGATGAAGTTTATGCCCAAGTAACTCTGCTACCTGAACCAGATCAAAGTGAGATTACTAGTCCTGATCCTCCACTCCCAGAACCTCAAAGATGCACAGTCCATTCATTTTGCAAGACGCTTACAGCTTCCGACACGAGCACCCATGGTGGATTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTACCTCCATTGGATATGTCCCAGCAGCCACCCTGGCAGGAATTGGTTGCAGCAGATCTGCATGGCAATGAATGGCACTTTCGTCACATATTTCGAGGGCAACCTAGGCGTCACTTGTTGACTACTGGATGGAGTGTATTTGTTAGCTCCAAAAAGTTAGTGGCTGGCGATGCATTTATATTCCTAAGGGGTGAAAACGGAGAACTGCGTGTTGGAGTAAGGAGGCTCATGAGACAACTAAGTAATATGCCATCTTCTGTTATATCCAGCCACAGCATGCATCTTGGAGTTCTCGCCACAGCCTCCCATGCAATTTCAACCGGAACCCTCTTTTCTGTCTTCTATAAACCAAGAACAAGTCGGTCGGAGTTCATTGTAAGCCTCAACAAGTACCTTGAAGCTCGCAACCACAAACTCTCTGTTGGGATGAGGTTTAAGATGAGATTTGAGGGCGAGGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTTGGTGTTGGGGACAAGAATACATCATCAGGATGGGCTGATTCTGAGTGGAGATCCTTGAAGGTTCAATGGGATGAACCTGCATCAATCTTTCGTCCGGAAAGAGTGTCAGCTTGGGAATTGGAACCACTTGTGGCAGCAGCTGCCCCTACAAATTTACAGCCCGCACAGAGGAATAAGCGGGCAAGGCCTCCAGTTTTACCTTCAGCAACACCAGATCTCTCTGTACTTGGCATGTGGAAATCCTCAGTTGAATCTCCATCAGGTTTCCCATATTGTGACCCACATCGTGGCCGAGACCTGTATCCATCACCTAAGTTCTCTTCTATTACAAAGACCAACTCTTTCAGTTTCAGTGGGAATAGCTCCCCCGCTGCAGTTTCCAGCAATTCAATGTACTGGTCGAATAGAATGGAAACCGCAACAGAGTCGTTTGCACCAGCTGTTAACAAAGAATCTGGTGAAAAGAGACGGGACACTGGCAGTGGCTGCAGGCTCTTCGGCTTTCAGCTGCTTGACAACTCCACGTTGGAGGAGACTTTGCCAGTATTGACAGTGGGAGAGGACCAGCCAGTTCCATCTTTAGATGTTGAATCTGACCAGCATTCTGAACCATCTAACATTAACCGATCTGATATTCCTTCTGTAAGTTGTGAGCCTGACAAATTGTCCCTGAGATCTCCCCAGGAGTCGCAAAGCAGGCAAATTCGGAGCTGCACAAAGGTTCACATGCAAGGGATTGCTGTTGGAAGGGCTGTAGATTTGACCCGGTTTGATCGGTATGAGGACCTGCTGAAGAAACTGGAGGAGATGTTTGATATTCAAGGCGAGCTATGTGGGTTGACAAGCATATGGCAAGTCGTGTACACTGATGATGAAGACGACATGATGATGGTTGGCGATGATCCATGGCTTGAGTTCTGCAGCATGGTGAGGAAGATTTTTATCTACACCGCTGAGGAAGTGAAGAGGCTGTCACCCAAGATAAAACTGCCGGCGATGGAAGAGATCAAACCAGGGAAGCTGGATTCAGATGTGGCCGTGGCTGGCACGGACGACCAGTCATCCGTGGTGGGGCCTGGTTGCTGA 2037 48.16 MALVASNYPSGGPHAGAPCDALYKELWHACAGPLVTVPREGERVYYFPQGHMEQLEASTTHQGLDQQMPSFNLPSKILCKVVHVQLRAEPETDEVYAQVTLLPEPDQSEITSPDPPLPEPQRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVAADLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSLNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDKNTSSGWADSEWRSLKVQWDEPASIFRPERVSAWELEPLVAAAAPTNLQPAQRNKRARPPVLPSATPDLSVLGMWKSSVESPSGFPYCDPHRGRDLYPSPKFSSITKTNSFSFSGNSSPAAVSSNSMYWSNRMETATESFAPAVNKESGEKRRDTGSGCRLFGFQLLDNSTLEETLPVLTVGEDQPVPSLDVESDQHSEPSNINRSDIPSVSCEPDKLSLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDRYEDLLKKLEEMFDIQGELCGLTSIWQVVYTDDEDDMMMVGDDPWLEFCSMVRKIFIYTAEEVKRLSPKIKLPAMEEIKPGKLDSDVAVAGTDDQSSVVGPGC* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21939958 21950048 - Vvi12g1224 Vvi12g1224 773747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1224 678 MobiDBLite consensus disorder prediction 504 553 - -
Vvi12g1224 678 CDD B3_DNA 126 228 IPR003340 GO:0003677
Vvi12g1224 678 MobiDBLite consensus disorder prediction 512 530 - -
Vvi12g1224 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Vvi12g1224 678 Gene3D - 291 365 - -
Vvi12g1224 678 PANTHER AUXIN RESPONSE FACTOR 9 9 656 - -
Vvi12g1224 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 656 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi12g1224 678 Gene3D - 125 230 IPR015300 -
Vvi12g1224 678 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi12g1224 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vvi12g1224 678 MobiDBLite consensus disorder prediction 538 553 - -
Vvi12g1224 678 ProSiteProfiles PB1 domain profile. 553 646 IPR000270 GO:0005515
Vvi12g1224 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Vvi12g1224 678 Gene3D - 548 642 - -
Vvi12g1224 678 Pfam AUX/IAA family 550 589 IPR033389 -
Vvi12g1224 678 SUPERFAMILY DNA-binding pseudobarrel domain 118 257 IPR015300 -
Vvi12g1224 678 SMART B3_2 128 230 IPR003340 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13776 PF02309 AUX_IAA 1.30E-10 CL0072 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1224 K14486 - vvi:100264303 1366.67