Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1236 ATGATTGATGATTCGAACAGCTCATATGGTAGAGATGAAGTTAATGCTAGATATGCATCCCCTGATTCTAGTACATTTGCTAGCAGTTCTGATGAAGAGGCTAATCTGAAGCTTCTTCAGTCTCAGTGTTTGGCGGTTCCTTCCTCGGCTTTTATCAGTTCACTCAAGTCCACCATTGATGTACTTCGAGGGACTATGTCAGTTGTGTCCCAGTTCACTAAAGTGTTCAATGATTTTCGGCTTTCTAATGCCATTTCAGATTGCCTTGAGTTGCTGGATTTTGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAGGTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATGGTTGAGCTCTACTTTCACTAATCAGGACACATGCATAGAGGGATTTGTTGGTACCAATGGAATTGTCAAGACAGTGGTAGCTGAAAGCCTGAGCCAAGTAGCTTCATTAGTCCACAGCCTTCTTACTATGGTCCATGATCCAGCTCCCAAAGGCAAATCCAATGGCGGTGGTGGCGGTGTGAAGCACGTGGGCAGCGGTGATTTTCCATCATGGGTTGGCAAACACAGCAGGAAGCTCCTTCAGGCCTCATCAGTGTCACCAGATGTTACAGTAGCTGCAGATGGAACTGGGAATTATACTACTGTGATGGATGCAGTCCAAGCAGCCCCTGATTACAGCCAGAACCACTATGTAATCTACATCAAGCAAGGCATTTATAGGGAGAATGTGGAGATCAAGAAGAAGAAATGGAACCTGATGATGGTCGGAGATGGGATGGGCGCTACTGTCATTACTGGAAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGGCAGGACCAGAGAAGCACCAAGCGGTAGCATTGAGGTCCGATTCAGACCTTTCGGTCTACTACAGATGCAGCATGAGGGGATACCAGGACACACTGTATCCCCACACGAATCGTCAATTCTACAGAGAGTGTAGAATCAGTGGCACCGTCGATTTCATATTCGGTGATGCCACGGTGGTCTTCCAAAACTGCCAAATCCTGGTGAAGAAGGGCTTACCAAATCAAAAGAACACCATCACCGCCCAAGGCCGCAAAGACCCTGCTCAGCCCACGGGCTTCTCAATACAATTCTCCAACATATCAGCAGATTCTGATCTTCTGGCTTCAGTGAACTCCACACTCTCGTACCTTGGTAGGCCATGGAAGCAATATTCGCGTACCATCATCATGAAATCCTACATCAGTGATGCCATTAGGCCAGAAGGATGGCTAGAGTGGAATGGGGATTTTGCTCTGGATACACTCTACTATGGTGAATATATGAACTATGGACCCAGTGCAGGCCTAGGCAGCAGGGTCCAGTGGCCGGGTTTTCATCTGTTGAACAACTCCGCTCAGGCCGCCAACTTCACGGTGACCGAATTCATAGCCGGAAACCTGTGGCTGCCGTCGACCGGGGTGAAATATTCAGCAGGATTAGCAGTTTAA 1584 47.66 MIDDSNSSYGRDEVNARYASPDSSTFASSSDEEANLKLLQSQCLAVPSSAFISSLKSTIDVLRGTMSVVSQFTKVFNDFRLSNAISDCLELLDFAADDLSWSLSAIQNPKGKDNGTGDLGSDLKTWLSSTFTNQDTCIEGFVGTNGIVKTVVAESLSQVASLVHSLLTMVHDPAPKGKSNGGGGGVKHVGSGDFPSWVGKHSRKLLQASSVSPDVTVAADGTGNYTTVMDAVQAAPDYSQNHYVIYIKQGIYRENVEIKKKKWNLMMVGDGMGATVITGNRSYIDGWTTYASATFAVKGKGFIARDMTFENTAGPEKHQAVALRSDSDLSVYYRCSMRGYQDTLYPHTNRQFYRECRISGTVDFIFGDATVVFQNCQILVKKGLPNQKNTITAQGRKDPAQPTGFSIQFSNISADSDLLASVNSTLSYLGRPWKQYSRTIIMKSYISDAIRPEGWLEWNGDFALDTLYYGEYMNYGPSAGLGSRVQWPGFHLLNNSAQAANFTVTEFIAGNLWLPSTGVKYSAGLAV* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22226000 22228636 + Vvi12g1236 Vvi12g1236 773759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1236 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 171 IPR035513 -
Vvi12g1236 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 172 IPR035513 -
Vvi12g1236 527 CDD PMEI-like_4 23 171 - -
Vvi12g1236 527 SUPERFAMILY Pectin lyase-like 210 524 IPR011050 -
Vvi12g1236 527 ProSitePatterns Pectinesterase signature 1. 239 258 IPR018040 -
Vvi12g1236 527 Pfam Plant invertase/pectin methylesterase inhibitor 53 160 IPR006501 GO:0004857
Vvi12g1236 527 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 45 525 - -
Vvi12g1236 527 Gene3D - 208 525 IPR012334 -
Vvi12g1236 527 MobiDBLite consensus disorder prediction 1 26 - -
Vvi12g1236 527 ProSitePatterns Pectinesterase signature 2. 358 367 IPR033131 -
Vvi12g1236 527 PANTHER PECTINESTERASE 45 525 - -
Vvi12g1236 527 Pfam Pectinesterase 214 511 IPR000070 GO:0030599|GO:0042545
Vvi12g1236 527 SMART PMEI_2 34 169 IPR006501 GO:0004857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1236 K01051 - vvi:100233113 999.193