Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1243 ATGGAGGGACTGCCACCACACCCGGTACCCAGAACTGTTGAAGAGGTCTTCAGCGATTACAGAGGCAGACGTGCCGGCTTGATCAAGGCCCTCACCACCGAAGTTGAAAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTGTATGGACTTCCAAATGAGACATGGGAAGTTAACCTGCCTGTTGAGGAGGTACCTCCTGAGCTTCCAGAACCAGCATTAGGTATAAACTTTGCTAGGGATGGGATGCAAGAGAAAGACTGGTTATCACTGGTTGCTGTGCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCCCGCTTTGGGTTTGGTAAGAGTGAAAGGAAGAGGCTTTTCCAGATGATAAACGAGCTTCCAACCATATTTGAAGTTGTGACAGGAGTTAAGCAACAAAGAGATATGTCTGGTAATCACAACAACAGCAACAAAAGCAAATCAAGTGGGAAGATGTCTCGGCAACCTGAACCCCAGACCAAGGGAGTAAAGGTGTCTCCTCCATCCAAGGAAGAAGACGAGAGTGGGGACGAAGATGCTGAAGATGATGAACAAGGAGCCATCTGTGGAGCTTGTGGGGATAACTATGCTAATGATGAATTCTGGATTTGCTGTGACGTGTGTGAGAAATGGTTCCATGGCAAATGTGTTAAGATTACACCTGCAAAGGCTGAGCATATCAAGCAATACAAGTGCCCGGGTTGCAGTAACAAAAGGGCTAGAGTTTAA 762 46.85 MEGLPPHPVPRTVEEVFSDYRGRRAGLIKALTTEVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKSERKRLFQMINELPTIFEVVTGVKQQRDMSGNHNNSNKSKSSGKMSRQPEPQTKGVKVSPPSKEEDESGDEDAEDDEQGAICGACGDNYANDEFWICCDVCEKWFHGKCVKITPAKAEHIKQYKCPGCSNKRARV* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22289096 22296036 - Vvi12g1243 Vvi12g1243 773766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1243 253 MobiDBLite consensus disorder prediction 143 173 - -
Vvi12g1243 253 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED 9 253 - -
Vvi12g1243 253 CDD PHD_AL_plant 200 249 IPR044104 -
Vvi12g1243 253 SMART PHD_3 199 247 IPR001965 -
Vvi12g1243 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Vvi12g1243 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Vvi12g1243 253 MobiDBLite consensus disorder prediction 142 194 - -
Vvi12g1243 253 PANTHER CPG BINDING PROTEIN 9 253 IPR045104 GO:0006355|GO:0042393
Vvi12g1243 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Vvi12g1243 253 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Vvi12g1243 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Vvi12g1243 253 Pfam PHD-finger 199 249 IPR019787 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13778 PF12165 Alfin 7.60E-69 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1243 - - vvi:100259036 478.018