Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1252 ATGGATTCAAGATTAATTCTGGTCTCTCTTCTAATTGTTTTCATCCAAATTTCAGCTACATGGGCAAGGACAAACACTGATGATGCCACGGCTCTAGTAGCTCTCAAGGACTTATGGGAGAACTACCCACCCAGTTGGGTTGGCTTCGATCCGTGTGGCAGCAGTTGGGAAGGAATTGGGTGCTACAATCAACGTGTGATCTCCATAATATTAACTAGCATGGGTTTGAAGGGCGGACTGTCAGGAGACCTCGACCAGTTATCTGAATTGCAGATTCTGGATCTATCATACAACAAGAATCTAACGGGAAACATTCCAGCATCAATCGGGAGTTTGAAGAAGCTAACAAACTTAATCCTTGTTGGTTGCAGTTTCTCTGGTCCAATTCCAGATACGATAGGATCTCTAACAGAGCTGGTCTTTTTATCTCTGAATTCTAATAGCTTCAGTGGAGGCATACCACCTTCCATTGGTAATCTATCTAAACTCTATTGGCTGGATCTAGCTGACAACCAGCTCACTGGAACCATTCCAATCTCTAATGGGAGTACACCTGGTCTGGATAAGCTCACCCACACCAAGCATTTCCACTTTGGAAAGAACCGGCTCTCTGGCTCAATCCCCCCTAAACTTTTCAGCTCAAACATGATTCTGATACACTTGCTTCTTGAGAGCAACCGGCTAACTGGCAGCATCCCTTCCACACTAGGACTTCTGAAGACGTTGGAGGTGGTACGCCTTGATGGAAATTCATTAAGTGGGCCTGTTCCTTCAAACCTCAACAATCTCACAGAAGTCAAGGACCTGTTTTTGTCCAACAATAAGTTGACTGGCACTGTGCCTGATCTTACCGGCATGAACAGCCTCAACTACATGGACATGAGCAACAACAGTTTTGACGTGTCAAACGTTCCTTCATGGTTGTCAACTTTGCAGTCTTTGACAACATTAACAATGGAGAACACAAACCTTAAAGGAGCTATCCCCGCCTCCCTCTTCAGCCTTCCCCAATTACAGACTGTGTCTCTAAGGAACAACATAATCAATGGCACCTTAGATTTTGGTGCTGGCTATAGCAGCCAACTACAACTCGTTGATTTGCAGAAAAATTACATTGTTGCTTTTACAGAAAGAGCAGGACATGATGTTGAGATAATACTTGTAGAAAACCCAATTTGTCTTGAAGGACCAAAGAATGAAAAATACTGCATGACTTCCCAACCCGACTTCTCATATTCAACACCTCCTAACAACTGTGTGCCCTCTGTCTGTAGTTCAGATCAAATTCCCAGCCCCAACTGTATATGTGCTTATCCATACATGGGAACCCTTGTCTTCAGAGCTCCTTCCTTTTCAAACTTGGGAAACTCAAGCTACTACATATCTCTTGAGCAGCGTCTGATGCAATCTTTTCAGTCCCAGCAACTTCCTGTAGACTCGGTTTTCTTGGCTGATCTAATGAAGGACTCAAATAATTACCTTCAGGTAAGCCTGAAAGTCTTTCCACATGGCCGAGATCGTTTCAATAGAACAGGGATTTCTATGGTTGGGTTTGCGCTCAGCAACCAGACTTTCAAGCCCCCATCCACTTTTGGGCCATTCTACTTCAATGGTGAGCAGTATCAATACTTTGAAGAGGTATCTCTATCTCTGGAACCAAATAAGTCATCAAATACAGGCATTATCATTGGAGCAGCAGTTGGTGGTTCCTTGCTTGTGCTATTATTACTCTTTGCAGGGGTTTATGCTTTTCGTCAAAAGAGGAGGGCAGAAAGGGCTACTGAACAGAGCAACCCTTTTGCAAACTGGGATGAGAGTAAAGGCAGTGGTGGTATACCTCAGTTAAAAGGGGCAAGACGGTTCACATTTGAAGAGATCAAGAAATGCACCAACAATTTTTCTGACGTCAATGATGTTGGATCTGGAGGTTATGGGAAGGTTTATAGAGCAACCCTTCCCACTGGGCAAATGGTTGCCATCAAACGAGCTAAACAGGAATCAATGCAGGGTGGTCTGGAGTTCAAAACAGAAATTGAGCTTCTATCAAGAGTTCATCATAAGAATGTGGTCAGCCTTATCGGTTTCTGCTTTCAGCTGGGTGAACAGATACTGATATATGAGTATGTCCCCAATGGTAGTCTCAAGGAATCTCTTTCAGGGAGGTCAGGAATCAGGTTGGACTGGAGGAGAAGACTCAAGGTAGCACTTGGTTCAGCCAGAGGCCTGGCATATTTGCATGAGCTTGCAGATCCTCCCATCATCCATAGGGACATCAAATCAAACAACATTCTATTGGACGAACACTTAAATGCTAAAGTTGGCGATTTTGGTCTCTGCAAGCTTTTGGCTGACAGTGAGAAGGGTCATGTTACCACTCAAGTCAAAGGGACAATGGGCTATATGGATCCGGAATATTACATGTCCCAACAGTTGACTGAAAAGAGTGATGTTTACAGCTTTGGAGTGCTAATGTTGGAGCTAATATCAGCAAGAAAGCCGATAGAGCGAGGGAAATACATCGTAAAAGAGGTGAAGATAGCGATGGATAAGACAAAAGATCTATACAACCTTCAGGGCCTTCTTGACCCAACCCTGGGCACAACACTTGGAGGGTTCAACAAGTTTGTGGATCTAGCACTGAGATGTGTTGAAGAATCAGGAGCTGATAGACCTACAATGGGTGAGGTGGTGAAAGAGATTGAAAACATCATGCAGCTGGCTGGTCTGAATCCCATTACTGAATCATCCTCTGCTTCAGCAAGCTATGAGGAGTCAAGTACGGGTACTTCCAGCCATCCCTATGGCAGTAATTCCGCCTTTGATATACGTAGTTGCTTTTCATGCCAAGGAAGTAATTGTAGGATACCTATTTTCCATGTGAAGAGGTGGCTGAATTTTCCTGTTTTGAGTAAGGCACAAAAAAACTTAGCCAAAAAGAGCTGCCCAGTAACCTCCAACAAAAAAAATAGCGAAGATAACCATTTATTTGGGTCCATCCACTACCTTATCTACTTATCTCCTCATTTAAGCACTTCCAACAACCTTGATGTTTTATTAGGCAGGTGGCTTAATAGAGATCCAAAAAATCCTATACTTGAGATCAAATTAAAACAGTGGCGGCTCAGAACAGAGCGATGTCATCATCAACATCAACTCCAACTCCAACTTGAAGGCAGTAAAGATAGTTTCAAGGGCACAAACACAAGGGAAAGAAAAGCCCGTGAAAACAACTTGACACCAAGGAAAGGCCCACAGAAAGCTGAAAATTCCAAAGCTATTAAATTAAATTGCACTCTCTTTGAAAGTTCACTTAGTCTTGCTCATATATATGATTTTGGTGATGCCACTACAGCTCTCAAGAGTTTGTTGAAGAACCTCCCGTTCACTTGGGTGGGCGCTGATCCCTGTGTCAACGGTTGGGAGGGAATTGGTTGCTCCAATGGACGTGTGATCTCCATAACATTAGCTAGCATGGATTTGAAGGGTGAACTGTCTGAAGATTTCCAGGGGCTATCTGAATTAAAGATTCTGGATCTATCTTACAACAAGGGTCTAACAGGAAATATTCCAGCATCAATTGGGAGTTTAAAGAGCCTAACAAACTTAATCCTTATGGGTTGCAGTTTCTCTGGTCAAATTCCAGATACAATAGGATCTCTAACAAATCTAGTCGTTTTATCTCTGAATTCTAATAGCTTCAGTGGAGTCATACCGCCTTCCATTGGTAATCTATATAATCTCAATTGGCTGGATATAACTGAAAACCAAATCACTGGAACCATTCCAATCTCTAATGGGGGTACACCTGGTCTGGATATGCTCACCCAAATGAAACATTTCCACTTTGGGAAGAACCGGCTCTCTGGCCCAATCCCCCCTCAACTTTTCAGCTCAAAAATGACAATGATACACTTGCTTCTTGACAACAACCATCTTACTGGCAGTATCCCTCCCACACTAGGACTTGCGACAACTTTGGAGATCATCCGCCTTGATAGGAATTTATTAAGCGGACCTGTTCCTTCAAACCTCAACAATCTTACAAGCCTCACTGAGCTGTTGCTGTCCAACAATAATTTGACTGGCACTGTGCCTAATCTTACAGGCATGAACCACCTCAGCTACCTGGACATGAGCCAAAATAATTTTGAAGTGTCAGACTTTCCTTCATGGTTTTCAACTTTACTGTCTTTGACAACATTAACGATGGAGTTCACAAAACTTACGGGAGATATTCCTGTCGCCCTCTTCAGCCTTCCCCAATTACAGACTGTGAAACTAAGGAACAACCAGATCACCGGCACACTAGAGTTTGGTTCTGCCTATAACAGCCATCTGCGACTCGTGGATTTGCAGAAAAATTACATTAGTGAATTTAAACCAGGACTAGAATATGAATTTAAGATAATACTTGTAGGTAACCCGATGTGTCAGGATGAAGGTAATGAAAAATACTGCACGCCTGCCCAGCCCAACTCCTCATATTCAACACAACCAAAGCACAGCTGTATCATCCCTTTCTGTAGTTCAGATTTAATTCTCGGCCCCAACTGTTCATGTGCTTATCCATACATAGGAACCCTTGTCTTCAGAGCTCCTTCTTTTTCAAACTCGGGAGACTCAAGTGATTACAAATCAATTGAGCAGTTCCTGATGCAACTTTTTCGGTCCCTGCAACTTCCTGTAGACACAGTTTCCCTGAGTAATTCGACCATGGTGGATGATTACCTTAAAGTTAACCTGAAAGTCTTTCCACAGGGCCAAGATCGTTTCAATAGAACAGGAATTTTTTTGGTTGGCTTTGCTCTCAGCAACCAAACTTCAGCATTCTCCTTCATTGCTGATCCGTATCAACACTTTGAAGAGGTACCTTCACCCCCGGGAGCAAAGAAGTCATCAAATACCGGCATTATTGTTGGAGCAACAACAGGTGGTTCCTTCCTTGCGCTATTATTACTCTTTGCAGGGGTTTATGCTTTTTCTCAAAAGAGGAGAGCAGAAAGAGCTACTAAACAGAGCAATCCTTTTGCAAAGTGGGATCAGAGAAAAGGCAGTGGTGGTATTCCTCAGTTAAAAGGAGCAAGACAGTTCACATTTGAAGAGATCAAGAAATGCACCAACAATTTTTCTGAAGCCAATAATGTTGGATCTGGAGGCTATGGGAAGGTGTATAGAGGAATCCTTCCCACTGGGCAAATGGTTGCTATCAAACGAGCTAAACAGGAATCAATGCAGGGTGGTCTGGAGTTCAAAACTGAACTTGAGCTTCTATCAAGAGTTCATCATAAAAATGTTGTCGGCCTTGTAGGTTTCTGCTTTGAGCACGGTGAACAGATGCTGGTATATGAGTTTGTCCCCAATGGTAGTCTCAAGGAATCTCTTTCAGGGAAGTCAGGAATCAGGTTGGACTGGAGGAAAAGACTCAAGGTAGCACTTTGTTCAGCCAGAGGTCTGGCTTATCTGCATGAGCTTGCTGAACCTCCCATCATCCATAGGGACATCAAATCAAACAACATTTTATTGGATGAACGCTTAAATGCAAAAGTTGCTGATTTTGGTCTCTGCAAGCTTTTGGCTGACAGTGAGAAGGGTCATGTTACCACTCAAGTCAAAGGGACAATGGGCTATTTGGATCCGGAATATTACATGTCCCAACAATTGACTGAAAAGAGTGATGTTTACAGCTTTGGAGTGCTAATGTTGGAGCTAATATCAGCAAGAAAGCCAATAGAGCGAGGGAAATACATCGTAAAAGAGGTGAAGATAGAGATGGATAAGACAAAAGATCTATACAACCTTCAGGGCCTTCTTGACCCAACCCTGGGCACAACACTTGGAGGGTTCAACAAGTTTGTGGATCTAGCACTGAGATGTGTTGAAGAATCAGGAGCTGATAGACCTAGAATGGGTGAGGTGGTGAAAGAGATTGAAAACATCATGCAGCTGGCTGGTCTGAATCCCATTATTGAATCATCCTCTGCTTCAGCAAGCTATGAGGAGTCAAGTACGGGTACTTCCAGCCATCCCTATGGCAATAATTCCGCTTTTGATAATAGTGTGGGCTATTCCCCTTCCACAGTACAGCCCAAGTGA 6093 43.2 MDSRLILVSLLIVFIQISATWARTNTDDATALVALKDLWENYPPSWVGFDPCGSSWEGIGCYNQRVISIILTSMGLKGGLSGDLDQLSELQILDLSYNKNLTGNIPASIGSLKKLTNLILVGCSFSGPIPDTIGSLTELVFLSLNSNSFSGGIPPSIGNLSKLYWLDLADNQLTGTIPISNGSTPGLDKLTHTKHFHFGKNRLSGSIPPKLFSSNMILIHLLLESNRLTGSIPSTLGLLKTLEVVRLDGNSLSGPVPSNLNNLTEVKDLFLSNNKLTGTVPDLTGMNSLNYMDMSNNSFDVSNVPSWLSTLQSLTTLTMENTNLKGAIPASLFSLPQLQTVSLRNNIINGTLDFGAGYSSQLQLVDLQKNYIVAFTERAGHDVEIILVENPICLEGPKNEKYCMTSQPDFSYSTPPNNCVPSVCSSDQIPSPNCICAYPYMGTLVFRAPSFSNLGNSSYYISLEQRLMQSFQSQQLPVDSVFLADLMKDSNNYLQVSLKVFPHGRDRFNRTGISMVGFALSNQTFKPPSTFGPFYFNGEQYQYFEEVSLSLEPNKSSNTGIIIGAAVGGSLLVLLLLFAGVYAFRQKRRAERATEQSNPFANWDESKGSGGIPQLKGARRFTFEEIKKCTNNFSDVNDVGSGGYGKVYRATLPTGQMVAIKRAKQESMQGGLEFKTEIELLSRVHHKNVVSLIGFCFQLGEQILIYEYVPNGSLKESLSGRSGIRLDWRRRLKVALGSARGLAYLHELADPPIIHRDIKSNNILLDEHLNAKVGDFGLCKLLADSEKGHVTTQVKGTMGYMDPEYYMSQQLTEKSDVYSFGVLMLELISARKPIERGKYIVKEVKIAMDKTKDLYNLQGLLDPTLGTTLGGFNKFVDLALRCVEESGADRPTMGEVVKEIENIMQLAGLNPITESSSASASYEESSTGTSSHPYGSNSAFDIRSCFSCQGSNCRIPIFHVKRWLNFPVLSKAQKNLAKKSCPVTSNKKNSEDNHLFGSIHYLIYLSPHLSTSNNLDVLLGRWLNRDPKNPILEIKLKQWRLRTERCHHQHQLQLQLEGSKDSFKGTNTRERKARENNLTPRKGPQKAENSKAIKLNCTLFESSLSLAHIYDFGDATTALKSLLKNLPFTWVGADPCVNGWEGIGCSNGRVISITLASMDLKGELSEDFQGLSELKILDLSYNKGLTGNIPASIGSLKSLTNLILMGCSFSGQIPDTIGSLTNLVVLSLNSNSFSGVIPPSIGNLYNLNWLDITENQITGTIPISNGGTPGLDMLTQMKHFHFGKNRLSGPIPPQLFSSKMTMIHLLLDNNHLTGSIPPTLGLATTLEIIRLDRNLLSGPVPSNLNNLTSLTELLLSNNNLTGTVPNLTGMNHLSYLDMSQNNFEVSDFPSWFSTLLSLTTLTMEFTKLTGDIPVALFSLPQLQTVKLRNNQITGTLEFGSAYNSHLRLVDLQKNYISEFKPGLEYEFKIILVGNPMCQDEGNEKYCTPAQPNSSYSTQPKHSCIIPFCSSDLILGPNCSCAYPYIGTLVFRAPSFSNSGDSSDYKSIEQFLMQLFRSLQLPVDTVSLSNSTMVDDYLKVNLKVFPQGQDRFNRTGIFLVGFALSNQTSAFSFIADPYQHFEEVPSPPGAKKSSNTGIIVGATTGGSFLALLLLFAGVYAFSQKRRAERATKQSNPFAKWDQRKGSGGIPQLKGARQFTFEEIKKCTNNFSEANNVGSGGYGKVYRGILPTGQMVAIKRAKQESMQGGLEFKTELELLSRVHHKNVVGLVGFCFEHGEQMLVYEFVPNGSLKESLSGKSGIRLDWRKRLKVALCSARGLAYLHELAEPPIIHRDIKSNNILLDERLNAKVADFGLCKLLADSEKGHVTTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARKPIERGKYIVKEVKIEMDKTKDLYNLQGLLDPTLGTTLGGFNKFVDLALRCVEESGADRPRMGEVVKEIENIMQLAGLNPIIESSSASASYEESSTGTSSHPYGNNSAFDNSVGYSPSTVQPK* 2031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22416959 22432819 - Vvi12g1252 Vvi12g1252 773775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1252 2030 SUPERFAMILY Protein kinase-like (PK-like) 1695 2005 IPR011009 -
Vvi12g1252 2030 Gene3D Ribonuclease Inhibitor 183 283 IPR032675 -
Vvi12g1252 2030 Gene3D Ribonuclease Inhibitor 1111 1268 IPR032675 -
Vvi12g1252 2030 SUPERFAMILY L domain-like 1138 1463 - -
Vvi12g1252 2030 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1117 2014 - -
Vvi12g1252 2030 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 937 - -
Vvi12g1252 2030 ProSiteProfiles Protein kinase domain profile. 633 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1252 2030 SMART serkin_6 1709 1980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1252 2030 SMART serkin_6 633 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1252 2030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 753 765 IPR008271 GO:0004672|GO:0006468
Vvi12g1252 2030 MobiDBLite consensus disorder prediction 1063 1081 - -
Vvi12g1252 2030 Gene3D Ribonuclease Inhibitor 284 401 IPR032675 -
Vvi12g1252 2030 CDD STKc_IRAK 1715 1979 - -
Vvi12g1252 2030 Gene3D Phosphorylase Kinase; domain 1 1682 1784 - -
Vvi12g1252 2030 Gene3D Phosphorylase Kinase; domain 1 607 708 - -
Vvi12g1252 2030 ProSitePatterns Protein kinases ATP-binding region signature. 639 661 IPR017441 GO:0005524
Vvi12g1252 2030 SUPERFAMILY L domain-like 45 376 - -
Vvi12g1252 2030 Gene3D Transferase(Phosphotransferase) domain 1 709 918 - -
Vvi12g1252 2030 Gene3D Transferase(Phosphotransferase) domain 1 1785 1989 - -
Vvi12g1252 2030 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Vvi12g1252 2030 MobiDBLite consensus disorder prediction 1057 1088 - -
Vvi12g1252 2030 SMART LRR_typ_2 87 108 IPR003591 -
Vvi12g1252 2030 SMART LRR_typ_2 136 160 IPR003591 -
Vvi12g1252 2030 SMART LRR_typ_2 263 287 IPR003591 -
Vvi12g1252 2030 SMART LRR_typ_2 1220 1244 IPR003591 -
Vvi12g1252 2030 SMART LRR_typ_2 1274 1298 IPR003591 -
Vvi12g1252 2030 SMART LRR_typ_2 1347 1370 IPR003591 -
Vvi12g1252 2030 SMART LRR_typ_2 311 335 IPR003591 -
Vvi12g1252 2030 MobiDBLite consensus disorder prediction 1994 2030 - -
Vvi12g1252 2030 CDD STKc_IRAK 639 903 - -
Vvi12g1252 2030 ProSiteProfiles Leucine-rich repeat profile. 1349 1371 IPR001611 GO:0005515
Vvi12g1252 2030 Gene3D Ribonuclease Inhibitor 1269 1470 IPR032675 -
Vvi12g1252 2030 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 5 937 - -
Vvi12g1252 2030 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 1117 2014 - -
Vvi12g1252 2030 Pfam Protein tyrosine and serine/threonine kinase 637 899 IPR001245 GO:0004672|GO:0006468
Vvi12g1252 2030 Pfam Protein tyrosine and serine/threonine kinase 1713 1975 IPR001245 GO:0004672|GO:0006468
Vvi12g1252 2030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1829 1841 IPR008271 GO:0004672|GO:0006468
Vvi12g1252 2030 SUPERFAMILY Protein kinase-like (PK-like) 619 931 IPR011009 -
Vvi12g1252 2030 ProSitePatterns Protein kinases ATP-binding region signature. 1715 1737 IPR017441 GO:0005524
Vvi12g1252 2030 ProSiteProfiles Protein kinase domain profile. 1709 1989 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76102 PF07714 PK_Tyr_Ser-Thr 6.70E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1252 - - vvi:100262527 1813.51