Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g130 ATGATGTCAAGATCGTATACCAATCTTTTAGATTTAGCTACTGGGAATTTTCCGGCAATCGGTCGAGAACGGAAGCGGCTTCCGAGGGTAATGACGGTTCCGGGCAATGTGTATGAACTTGATGATGATCAGGCTAATAGTGTGTCGTCTGATAACCCCTCTTCAGTTGCTCAAGATCGGTTGATTATAGTGGCAAACCAGTTGCCTGTGAAAGCTAACCGAAGAGCAGATGATAGAGGCTGGGTTTTTAGTTGGAATGAAGACTCATTGCTTCTGCAACTTAAGGAGGGTCGGTTTGATCGGTCTATGTGGGAAGCATATGTGTTGGCAAATAAGTTATTCTCACAAAAGGTTATTGAGGTGATAAACCCAGATGATGATTATGTTTGGATTCATGATTACCATTTGATGGTATTGCCAACTTTCTTGAGGAGGCACTTTAACCAGTTAAGAATGGGTTTTTTTCTTCATAGTCCATTTCCATCTTCAGAGATCTACAGGACTCTTCCTGTCAGAGAAGAAATTCTTAAGGCTTTGCTTAACTCAGACCTTATTGGTTTCCACACATTTGATTATGCTCGGCATTTCCTTTCTTGTTGCAGTCGGATGTTGGGTTTGGAGTATCAGTCAAAGAGGGGCTATATAGGGTTGGAATATTATGGAAGGACTGTGGGGATCAAGATTATGCCTGTTGGGATTCATATGGGCCGGATTGCTTCAGTGATGAAGCTTGCAGACAAGCAGAAGAAGGTAGGAGAGCTCAAGCAGCAGTTTGAAGGGAAAACGGTGTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGTATTAATTTGAAGCTATTGGCAATGGAACAGTTGCTTCAGCAACACTCAAAGTGGCAAGGAAAGGCCGTGTTGGTTCAGATTGCAAACCCTGCAAGAGGTAAAGGAGCAGATTTAGAGGAAATACAAGCTGAAATAAGGGAAAGCTGCAGAAGAATCAATGAAGAATTTGGGGAGCCCGGGTATGAACCAATAGTTTTTGTTGACAGACCAGTTTCAATCAGTGAGAGAATTGCCTATTACAGTATTGCTGCGTGTGTTGTTGTCACGGCTGTCAGGGATGGGATGAACCTTACTCCGTATGAATACATTGTTTGTAGACAAGGAACAGATGATTCTGAATCAAGTTCGGATTTGAGTGGGCCCAAGAAGAGCATGCTAGTGCTATCAGAATTTATTGGATGCTCTCCTTCACTTAGTGGGGCTATCCGTGTGAATCCATGGAATGTCGAAGCAACTGCTGAGGCAATGAATGAAGCTATTTCAATGTCTCAATCAGAGCAACTCCTGCGACATGAGAAGCATTTTCGGTATGTTAGCACCCATGATGTGGCTTATTGGTCACGAAGCTTCTTGCAAGATATGGAGAGAACCTGCTCAGAGCACTTTAGGAGAAGATGCTGGGGAATTGGTTTAAGTTTTGGGTTCAGAGTTGTAGCACTTGATCCTAATTTTAGAAAGCTTTCAATGGAGGCTATTGTTTCGGCCTACTGTAGGGCTAAGAGTAGGGCCATACTGTTGGACTATGATGGCACTGTGATGCCCCAAAATTCCATCAACAAGGCTCCAAGTCAGGAGGTTATTTCAATTCTAAACACACTTTGCTGGGACAAGAAAAATACAGTTTTTATTGTCAGTGGAAGAGGAAGGGATAACTTAAGCCAGTGGTTTTCCCCCTGCAGGAAGCTTGGACTTGCAGCAGAACATGGTTACTTCTTAAGGTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGGGTGGAAGCAAATTGCTGAACCTGTGATGAAGTTGTACACTGAGACTACTGATGGGTCTTCCATTGAAAGTAAAGAGAGTGCTCTGGTTTGGCAATATGGGGATGCGGACCCAGGCTTTGGATCCTCTCAGGCAAAGGAAATGTTGGATCATCTAGAGAGTGTATTAGCAAATGAACCTGTTGCTGTCAAAAGTGGTCATTTTATTGTAGAAGTTAAGCCTCAGGGAGTTAGCAAAGGCCTAGCTGCAGAAAAGATCTTCACCACAATGACTGAAAATGGAAAACAAGCTGATTTTTTGCTTTGTATTGGAGATGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAGTGCAATGTCAACAAATATTCTTTCTGCCAACACTTCATTGTTTGCATGCACGGTAGGGCAAAAGCCCAGCAAAGCTAAATATTATTTGGATGACGCAAGCGAAGTGATATGCATGCTTGAGTCACTTGCTGAAGCCTCTGATTCTGGACCATCCTCTGAAGAAGAAACTCAGGTCTCCCCTTGA 2349 42.83 MMSRSYTNLLDLATGNFPAIGRERKRLPRVMTVPGNVYELDDDQANSVSSDNPSSVAQDRLIIVANQLPVKANRRADDRGWVFSWNEDSLLLQLKEGRFDRSMWEAYVLANKLFSQKVIEVINPDDDYVWIHDYHLMVLPTFLRRHFNQLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGIHMGRIASVMKLADKQKKVGELKQQFEGKTVLLGVDDMDIFKGINLKLLAMEQLLQQHSKWQGKAVLVQIANPARGKGADLEEIQAEIRESCRRINEEFGEPGYEPIVFVDRPVSISERIAYYSIAACVVVTAVRDGMNLTPYEYIVCRQGTDDSESSSDLSGPKKSMLVLSEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMSQSEQLLRHEKHFRYVSTHDVAYWSRSFLQDMERTCSEHFRRRCWGIGLSFGFRVVALDPNFRKLSMEAIVSAYCRAKSRAILLDYDGTVMPQNSINKAPSQEVISILNTLCWDKKNTVFIVSGRGRDNLSQWFSPCRKLGLAAEHGYFLRWSQDKEWETCGQSSDFGWKQIAEPVMKLYTETTDGSSIESKESALVWQYGDADPGFGSSQAKEMLDHLESVLANEPVAVKSGHFIVEVKPQGVSKGLAAEKIFTTMTENGKQADFLLCIGDDRSDEDMFEIIGSAMSTNILSANTSLFACTVGQKPSKAKYYLDDASEVICMLESLAEASDSGPSSEEETQVSP* 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2329570 2333082 - Vvi12g130 Vvi12g130 772653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g130 782 Gene3D - 600 679 - -
Vvi12g130 782 CDD GT20_TPS 91 470 IPR001830 GO:0003824|GO:0005992
Vvi12g130 782 Pfam Trehalose-phosphatase 520 754 IPR003337 GO:0003824|GO:0005992
Vvi12g130 782 Gene3D - 519 751 IPR023214 -
Vvi12g130 782 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 473 - -
Vvi12g130 782 Gene3D Glycogen Phosphorylase B; 85 240 - -
Vvi12g130 782 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 97 IPR001830 GO:0003824|GO:0005992
Vvi12g130 782 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 95 778 IPR001830 GO:0003824|GO:0005992
Vvi12g130 782 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 519 723 IPR006379 -
Vvi12g130 782 CDD HAD_TPP 518 757 - -
Vvi12g130 782 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 95 778 - -
Vvi12g130 782 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 97 - -
Vvi12g130 782 Pfam Glycosyltransferase family 20 95 470 IPR001830 GO:0003824|GO:0005992
Vvi12g130 782 SUPERFAMILY HAD-like 517 765 IPR036412 -
Vvi12g130 782 TIGRFAM T6PP: trehalose-phosphatase 514 765 IPR003337 GO:0003824|GO:0005992
Vvi12g130 782 Gene3D Glycogen Phosphorylase B; 241 454 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g251 Vvi12g130 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g130 K16055 - vvi:100255689 1384.01