Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g145 ATGGCCTCCTTTACCAACTCTTTTGTTGTATTCTCCATCATTTCTCTCCTTGCTTGCTCCATCAATGGTCAGCTTTCGCCTAATTTCTATGCGTCCACTTGCCCTAACGTTCAAAATATTGTGCGGGTTGCAATGAGGCAGGCTGTGATTAGAGAGCCACGAATGGGTGCTTCGATTCTTCGCTTGTTCTTTCATGATTGTTTCGTGAATGGTTGTGATGCATCAATACTACTGGACGATACAGCCACATTCACTGGAGAAAAGAATGCTCTTCCGAACCAGAACTCAGTTAGGGGTTTTGAAGTAATTGACACCATTAAAACCCGAGTTGAGGCTGCTTGCAATGCCACGGTATCTTGTGCAGACATCCTGGCACTGGCAGCACGTGATGGAGTCGTCCAGCTAGGAGGACCCTCTTGGACGGTACCACTTGGGAGGAGAGATGCAAGAACAGCCAGCCAGAGTGCAGCAAACAACGAGATTCCATCGCCATTGGCTAGCCTCTCGGCCCTCATCTCCGGTTTTGCTGCCAAAGGTCTAAATGCCCGTGATATGACCGCTCTGTCAGGTAGCCATACAATAGGCCAAGCTCAGTGCTTCACTTTCCGCTCCCGCATCTACAACGACACCAACATCGACCCCAACTTTGCTGCCACCCGAAGATCTACATGCCCAGTTTCAGGCGGAAACTCCAACTTGGCCCCCCTTGATATACGGACCATGAATAGGTTTGATAACATTTACTACCAAAACCTTATGACTCGGCGTGGGCTTCTCCATTCAGACCAGGAGCTGTTCAACGGTGGGTCTCAGGATGCTTTGGTTAGGACCTATAATGCTAACAATGCCTTGTTTTTCCGAGACTTCGCTGCTGCTATGGTGAAGATGAGCAATATCAGCCCGCTCACTGGAACAAATGGCGAGATCAGAAGCAACTGCAGGGTGCAAAAAAAAAAACCCGTGAACCATCTCTTCTGTTCTACTCTTCTTCTCTTTTGCTCTCTGATTTTCTTCCTTGCTCTAGAATGCATGGTCAGCCCCCCTTCCTCTCTAAGACCGATTGGCAGTCTTCCTGTTCTTTGGCAGCATGCAGCATGTACATCGAATCCTCATGGTACGGCTGCCCCTCTCCTTTATGAACGGTGCGAGAAAATCAGAACACTTACCGGCCCCTTTCTCTGGTGCCCTACTTTTTTAATTCTACGCGTGATCCTCTTCAGTATGGAAAGTGTGGCTGCCAATATGGAATGCATAGCTGCCTTGTCTGTGAAGTTGTGA 1278 48.59 MASFTNSFVVFSIISLLACSINGQLSPNFYASTCPNVQNIVRVAMRQAVIREPRMGASILRLFFHDCFVNGCDASILLDDTATFTGEKNALPNQNSVRGFEVIDTIKTRVEAACNATVSCADILALAARDGVVQLGGPSWTVPLGRRDARTASQSAANNEIPSPLASLSALISGFAAKGLNARDMTALSGSHTIGQAQCFTFRSRIYNDTNIDPNFAATRRSTCPVSGGNSNLAPLDIRTMNRFDNIYYQNLMTRRGLLHSDQELFNGGSQDALVRTYNANNALFFRDFAAAMVKMSNISPLTGTNGEIRSNCRVQKKKPVNHLFCSTLLLFCSLIFFLALECMVSPPSSLRPIGSLPVLWQHAACTSNPHGTAAPLLYERCEKIRTLTGPFLWCPTFLILRVILFSMESVAANMECIAALSVKL* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2463289 2469852 - Vvi12g145 Vvi12g145 772668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g145 425 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Vvi12g145 425 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Vvi12g145 425 PANTHER PEROXIDASE 6 315 - -
Vvi12g145 425 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 ProSiteProfiles Plant heme peroxidase family profile. 24 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 Gene3D - 28 314 - -
Vvi12g145 425 Pfam Peroxidase 42 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 Gene3D Peroxidase, domain 2 162 296 - -
Vvi12g145 425 PANTHER PEROXIDASE 72-RELATED 6 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g145 425 CDD secretory_peroxidase 24 315 IPR033905 GO:0004601|GO:0042744
Vvi12g145 425 SUPERFAMILY Heme-dependent peroxidases 24 315 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g145 K00430 - vvi:100264421 617.076