Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g164 ATGGAGGAGACACGAGATGATGCAGGGCCAGCAGAGCAAGGGTCTCCTGTTACAACATGGTGGCCATCAGATTTCATTGAAAGATTTGGATCTGTTTCTCTGGTTTCTCAAGAAGAAATTTTGAGTAATAAAAATTCTAATAGCAACACTGAACAAGATGAGCTGTCATCTCAGACAGCCTCACAAATTCTCTGGAGCACTGGAATGCTTTCTGAACCGATTCCTAATGGTTTCTACAGTGTCATTCCGGACAAAAAGCTTAAGGAGATTTTTGATGATATTCCTACTCTGGATGAGCTTTATGCTTTGGGAAGCGAGGGTGTCAGAGCTGATATCATTCTTGTAGATGCTGTGAGAGATAAAAAATTATCTATGCTGAAGCAACTAATTGTGGCATTGGTGAAGGGACTAAACTCAAATCCAGCTGCAGTGATTAAAAAGATTGCTGGATTGGTTTCAGATTTCTATAAGCGGCCAAATTTGGAACTAAGTCCAGCAAAAGCTGCACTAGAGGAAACCTCTCATGTGTCTGAGAATCGAGTAGCCCAGTTACTGGGCCAAATAAAACATGGTTCTTGCCGTCCTCGGGCAATTCTATTCAAAGTTCTTGCAGATACTGTCGGTCTTGAAAGCAGGCTCATGGTGGGTTTACCTAATGATGGGGCTATTGGGTGCGTAGACTCATATAAACATATGTCTGTGATAGTCATGTTGAATTCTGGGGAACTACTGGTCGATCTGATGCGATTTCCTGGCCAGCTGATACCTAGATCAACCAGGGCAATTTTTATGACCCATATTTCTGCAGCAGGGGAAAGTGACTCTGCAGAGAATGATTCTTGTGATTCTCCCCTAGAACCAAACAGTCCTTTGTATGGTTTTTCAGATAGAGTTGACCCTGACAGTACTGAGAAAGATGAGGGCCTTCAGTTCCAACGGAGATTAGAAGCATCATCAAATGTATCAGGCCCTTCTTTACGGAATGTAATGCTGCGATCTACCCCCTCTATTGATAGAAAATTGAGTTTATCGCATAGTGAACCCAATATTGCTACTACTTTTTGGCGACGGAGCCGGAGAAAGGTCATTGCTGAACAACGAACTGCCAGTTCAAGTCCAGAGCACCCTTCATTTCGAGCACGTGGGCGGTCAATGCTTAGCGGTGATAGGAAATCATTTAGAGATTATGCTGATGACATAGCTGCCTCAAGCTATAGGTCAGATGGTGCATCAACATCAACGTCAGAAACTCGAAGAATAAGAAGAAGAAGCATTAGTATTACTCCAGAGATTGGCGATGATATCGTAAGGGCTGTACGTGCAATGAATGAAACACTGAAGGCTAACCGTCTTATGAGAGACCAAGGCGATGACAGGGCATTTTCCAGTAATCCAGATATTCAAAAAAATGTATCTGATTTCCATCTTGATGGTCATGGGGAAATATCTCATGGAAGCTCTTCTATGTATACCCTGCCTAGGGAGCAAATAAGTTCCCAAAAGGCAATATCGTTGCCTTCATCTCCTCATGAATTTAGGAGTCAGACTTCTGGGAGAAGTGGAACTTCAGACATAGTGAATGATGAAATGGTTTCAATCTGGAACAGGGTTCTTGAAAAACCAATGTTCCATAGCAAGCCTCTATTACCTTTCCAAGAATGGAATATTGATTTCTCAGAATTAACTGTTGGAACTCGTGTTGGGATTGGGTTCTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGGACAGATGTTGCCATCAAGGTTTTTCTGGAGCAAGATCTTACTGCTGAGAACATGGAAGATTTCTGCAATGAAATATCCATCCTTAGCCGCCTTCGACACCCAAATGTTATTTTATTTTTGGGTGCATGCACAAAGCCTCCACGCTTGTCAATGATAACTGAATACATGGAGATAGGATCTTTGTATTACTTGATCCATTTGAGTGGTCAGAAGAAGAAACTCAGCTGGCGTCGGAGAATTAAAATGCTGCGTGATATATGCAGGGGTTTGATGTGCATACACCGGATGAAGATTGTCCATCGTGACATAAAGAGTGCAAATTGTCTCGTCAATAAGCATTGGACTGTCAAGATTTGCGATTTCGGGCTCTCAAGAGTAATGACAGACACACCCTTGAGAGATTCCTCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAACTCATCCGCAATGAACCCTTCACAGAGAAATGTGATATTTTTAGCTTTGGGATGATTATGTGGGAGCTCTGCACTCTTAATAGACCATGGGAAGGCGTGCCACCAGAACGGGTGGTATATGCTGTTGCTCATGAAGGATCACGGCTGGATATTCCTGAAGGCCCCCTGGGCATGCTTATAGCAGATTGCTGGGCAGAACCGCATCAAAGGCCAAGCTGTGAGGATATCCTCTCCCGCTTGCAGGACTGCGAGTATACCCTCTGCTAA 2454 43.44 MEETRDDAGPAEQGSPVTTWWPSDFIERFGSVSLVSQEEILSNKNSNSNTEQDELSSQTASQILWSTGMLSEPIPNGFYSVIPDKKLKEIFDDIPTLDELYALGSEGVRADIILVDAVRDKKLSMLKQLIVALVKGLNSNPAAVIKKIAGLVSDFYKRPNLELSPAKAALEETSHVSENRVAQLLGQIKHGSCRPRAILFKVLADTVGLESRLMVGLPNDGAIGCVDSYKHMSVIVMLNSGELLVDLMRFPGQLIPRSTRAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSDRVDPDSTEKDEGLQFQRRLEASSNVSGPSLRNVMLRSTPSIDRKLSLSHSEPNIATTFWRRSRRKVIAEQRTASSSPEHPSFRARGRSMLSGDRKSFRDYADDIAASSYRSDGASTSTSETRRIRRRSISITPEIGDDIVRAVRAMNETLKANRLMRDQGDDRAFSSNPDIQKNVSDFHLDGHGEISHGSSSMYTLPREQISSQKAISLPSSPHEFRSQTSGRSGTSDIVNDEMVSIWNRVLEKPMFHSKPLLPFQEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEIGSLYYLIHLSGQKKKLSWRRRIKMLRDICRGLMCIHRMKIVHRDIKSANCLVNKHWTVKICDFGLSRVMTDTPLRDSSSAGTPEWMAPELIRNEPFTEKCDIFSFGMIMWELCTLNRPWEGVPPERVVYAVAHEGSRLDIPEGPLGMLIADCWAEPHQRPSCEDILSRLQDCEYTLC* 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2837401 2887099 + Vvi12g164 Vvi12g164 772687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g164 817 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 28 815 - -
Vvi12g164 817 PANTHER MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED 28 815 - -
Vvi12g164 817 MobiDBLite consensus disorder prediction 500 521 - -
Vvi12g164 817 Pfam Ethylene-responsive protein kinase Le-CTR1 57 255 - -
Vvi12g164 817 SUPERFAMILY Protein kinase-like (PK-like) 537 809 IPR011009 -
Vvi12g164 817 ProSitePatterns Protein kinases ATP-binding region signature. 567 588 IPR017441 GO:0005524
Vvi12g164 817 ProSiteProfiles Protein kinase domain profile. 561 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g164 817 Gene3D Phosphorylase Kinase; domain 1 554 639 - -
Vvi12g164 817 SMART serkin_6 561 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g164 817 MobiDBLite consensus disorder prediction 273 307 - -
Vvi12g164 817 Pfam Protein tyrosine and serine/threonine kinase 562 809 IPR001245 GO:0004672|GO:0006468
Vvi12g164 817 MobiDBLite consensus disorder prediction 365 386 - -
Vvi12g164 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672|GO:0006468
Vvi12g164 817 Gene3D Transferase(Phosphotransferase) domain 1 640 816 - -
Vvi12g164 817 CDD STKc_MAP3K-like 567 809 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g220 Vvi12g164 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76109 PF07714 PK_Tyr_Ser-Thr 4.90E-61 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g164 - - vvi:100255804 1620.91