Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi12g20 | ATGAAAGCTAGCCAACTCCAAATCCAAAAAGTTAAAAACATGAGAGGTCCTCTCGTTTTGAACAAACCATTTCCATTTTCTGCAACTCTCCTGTGCAGAACTATACCAAAGAATCGTGTGAATTCAACCAGAGGAGAAAAAAAAAAAGAAAAAATTGTTGTTTCCACCCTTGTTTATCTACTTCTCCTAAGTTTCCTTACCAGCTCATTTCAGCTTTCAACCACGGAGTTTCCGAATCAAGCCTCGGAGGGGTCTTCCCAAAGAAAAATGGGAAGAGGGAAGATCGAAATTAAGCGGATCGAGAACACCACTAATCGACAAGTCACCTTCTGTAAGCGCCGCAACGGCTTGCTCAAAAAGGCCTATGAATTATCGGTCTTATGTGATGCAGAAGTTGCTCTCATCGTCTTCTCCAGCCGTGGCCGCCTCTATGAATATGCTAACAACAGTGTGAGAACGACAATCGAAAGGTACAAAAAAGTGTGTTCTGATTCCTCCAATACCGGATCTGTTTCTGAAGCTAATGCTCAGTTTTACCAGCAAGAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAATCTGGAGACCAGGTTGGAGAAAGGTATCAGCAGAATCAGATCCAAAAAGAATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCTCAGTACGAGAGCGTGCCGCAGCAGCCATACGACTCTCAAAACTTGCTCCCTGTTAACCTCCTGGACCCTAATCACCATTACTCTCGCCACGACCAAACAGCTCTCCAACTAGTGACTATTTGTCTACTTTATTTATATCTAAAAACTTATTTTTCCTCAATCTTAAAAATTAATAAATTAATGAAATATCATTTTATTGTTGCTTTATCTTATAATGGATTAGTGAGAAGTGGTGCTGTATTTGTGGGTCTCTTCGTGGAGTAG | 1092 | 41.58 | MKASQLQIQKVKNMRGPLVLNKPFPFSATLLCRTIPKNRVNSTRGEKKKEKIVVSTLVYLLLLSFLTSSFQLSTTEFPNQASEGSSQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRTTIERYKKVCSDSSNTGSVSEANAQFYQQEASKLRRQIRDIQNLNRHILGEALSSLNFKELKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIELQNSNLFLRAQIAENERAQQQMNLMPGSQYESVPQQPYDSQNLLPVNLLDPNHHYSRHDQTALQLVTICLLYLYLKTYFSSILKINKLMKYHFIVALSYNGLVRSGAVFVGLFVE* | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 279314 | 292144 | - | Vvi12g20 | Vvi12g20 | 772543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi12g20 | 363 | ProSiteProfiles | MADS-box domain profile. | 90 | 150 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi12g20 | 363 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 99 | 146 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi12g20 | 363 | Coils | Coil | 244 | 264 | - | - | |
Vvi12g20 | 363 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN | 79 | 307 | - | - | |
Vvi12g20 | 363 | SUPERFAMILY | SRF-like | 91 | 163 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi12g20 | 363 | ProSiteProfiles | K-box domain profile. | 176 | 266 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vvi12g20 | 363 | Gene3D | - | 102 | 197 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi12g20 | 363 | Coils | Coil | 176 | 196 | - | - | |
Vvi12g20 | 363 | SMART | madsneu2 | 90 | 149 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi12g20 | 363 | PRINTS | MADS domain signature | 92 | 112 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi12g20 | 363 | PRINTS | MADS domain signature | 112 | 127 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi12g20 | 363 | PRINTS | MADS domain signature | 127 | 148 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi12g20 | 363 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 79 | 307 | - | - | |
Vvi12g20 | 363 | Coils | Coil | 213 | 233 | - | - | |
Vvi12g20 | 363 | Pfam | K-box region | 174 | 260 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vvi12g20 | 363 | ProSitePatterns | MADS-box domain signature. | 92 | 146 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi12g20 | 363 | CDD | MADS_MEF2_like | 91 | 167 | IPR033896 | GO:0000977|GO:0045944 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13784 | PF01486 | K-box | 7.90E-26 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi12g20 | K09264 | - | vvi:100232864 | 441.81 |