Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g20 ATGAAAGCTAGCCAACTCCAAATCCAAAAAGTTAAAAACATGAGAGGTCCTCTCGTTTTGAACAAACCATTTCCATTTTCTGCAACTCTCCTGTGCAGAACTATACCAAAGAATCGTGTGAATTCAACCAGAGGAGAAAAAAAAAAAGAAAAAATTGTTGTTTCCACCCTTGTTTATCTACTTCTCCTAAGTTTCCTTACCAGCTCATTTCAGCTTTCAACCACGGAGTTTCCGAATCAAGCCTCGGAGGGGTCTTCCCAAAGAAAAATGGGAAGAGGGAAGATCGAAATTAAGCGGATCGAGAACACCACTAATCGACAAGTCACCTTCTGTAAGCGCCGCAACGGCTTGCTCAAAAAGGCCTATGAATTATCGGTCTTATGTGATGCAGAAGTTGCTCTCATCGTCTTCTCCAGCCGTGGCCGCCTCTATGAATATGCTAACAACAGTGTGAGAACGACAATCGAAAGGTACAAAAAAGTGTGTTCTGATTCCTCCAATACCGGATCTGTTTCTGAAGCTAATGCTCAGTTTTACCAGCAAGAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAATCTGGAGACCAGGTTGGAGAAAGGTATCAGCAGAATCAGATCCAAAAAGAATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCTCAGTACGAGAGCGTGCCGCAGCAGCCATACGACTCTCAAAACTTGCTCCCTGTTAACCTCCTGGACCCTAATCACCATTACTCTCGCCACGACCAAACAGCTCTCCAACTAGTGACTATTTGTCTACTTTATTTATATCTAAAAACTTATTTTTCCTCAATCTTAAAAATTAATAAATTAATGAAATATCATTTTATTGTTGCTTTATCTTATAATGGATTAGTGAGAAGTGGTGCTGTATTTGTGGGTCTCTTCGTGGAGTAG 1092 41.58 MKASQLQIQKVKNMRGPLVLNKPFPFSATLLCRTIPKNRVNSTRGEKKKEKIVVSTLVYLLLLSFLTSSFQLSTTEFPNQASEGSSQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRTTIERYKKVCSDSSNTGSVSEANAQFYQQEASKLRRQIRDIQNLNRHILGEALSSLNFKELKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIELQNSNLFLRAQIAENERAQQQMNLMPGSQYESVPQQPYDSQNLLPVNLLDPNHHYSRHDQTALQLVTICLLYLYLKTYFSSILKINKLMKYHFIVALSYNGLVRSGAVFVGLFVE* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 279314 292144 - Vvi12g20 Vvi12g20 772543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g20 363 ProSiteProfiles MADS-box domain profile. 90 150 IPR002100 GO:0003677|GO:0046983
Vvi12g20 363 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 99 146 IPR002100 GO:0003677|GO:0046983
Vvi12g20 363 Coils Coil 244 264 - -
Vvi12g20 363 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 79 307 - -
Vvi12g20 363 SUPERFAMILY SRF-like 91 163 IPR036879 GO:0003677|GO:0046983
Vvi12g20 363 ProSiteProfiles K-box domain profile. 176 266 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi12g20 363 Gene3D - 102 197 IPR036879 GO:0003677|GO:0046983
Vvi12g20 363 Coils Coil 176 196 - -
Vvi12g20 363 SMART madsneu2 90 149 IPR002100 GO:0003677|GO:0046983
Vvi12g20 363 PRINTS MADS domain signature 92 112 IPR002100 GO:0003677|GO:0046983
Vvi12g20 363 PRINTS MADS domain signature 112 127 IPR002100 GO:0003677|GO:0046983
Vvi12g20 363 PRINTS MADS domain signature 127 148 IPR002100 GO:0003677|GO:0046983
Vvi12g20 363 PANTHER SERUM RESPONSE FACTOR HOMOLOG 79 307 - -
Vvi12g20 363 Coils Coil 213 233 - -
Vvi12g20 363 Pfam K-box region 174 260 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi12g20 363 ProSitePatterns MADS-box domain signature. 92 146 IPR002100 GO:0003677|GO:0046983
Vvi12g20 363 CDD MADS_MEF2_like 91 167 IPR033896 GO:0000977|GO:0045944
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13784 PF01486 K-box 7.90E-26 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g20 K09264 - vvi:100232864 441.81