Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g203 ATGAAGAGTGCTGGAGGGGGAGAGATAGTGCAAGTCCAAGGAGGCCACATTGTGCGGTCCACAGGGCGGAAAGACCGGCATAGCAAGGTCTACACTGCAAAAGGTCCTAGGGACCGCAGGGTTCGTTTATCAGCCCACACAGCCATTCAATTCTATGATGTGCAGGATCGGCTGGGCTATGACAGGCCCAGCAAAGCCGTAGATTGGCTAATCAAGAAGGCAAAATCTTCCATAGACAAGCTTGCTGAGCTACCACCATGGCACCCCATTGCCCTGGACCCCAATGCCAGTGCTGGGACTAGCGACATAGGCATGGCTCAGCAGTCCCAGGAGTCCAATTATGTGTTCCCTCCATTGGGTGGTGGGGGTGGGGTTGGTGGTGAAAACCCAAGCAATGATTCTGCCTTCATTGCACCACCTCTGGACTCTGATTCCATTGCTGACACTATGAAATCTTTCTTTCCCACTAGTTCAGGGACTTCCTCAATCAATTATCAGAACTACCCGCCTGATAGCAACCATCATAATGAAGATCTTTGTCTATCTCTTCATTCTTTCCAAGACCCAGATGCGGAGTCCAACCACAAGAACCTTTTTGCCAGTGCAGCACAAGTTGGGTATGAGACTAATTTCCAGAGAATGGTGAGTTGGGGAGGAGGTGGTGGAGATTCAGAGAGTCGCGTTTTGCTCCTGCTGTTCGTGCTTGGAATGAGCTTCCTATTGCTTCTGGGGCAATGCATCAATCTTCACTCTCTGATGGCAGGTTTGTGCCAAATGGAGTCCCAGGTTTTCGAATTCCAGCACGAATTCAGGGTGAGGAGGAGCATAGCGTGGTCTCAGATAGGCCATCCTCTTCCTCCCCCAACTCTCATCACTGAATACACTTTTTCATCCAACAGGATTTTCTCTAGGCTTTCATGGTGA 924 50.11 MKSAGGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWHPIALDPNASAGTSDIGMAQQSQESNYVFPPLGGGGGVGGENPSNDSAFIAPPLDSDSIADTMKSFFPTSSGTSSINYQNYPPDSNHHNEDLCLSLHSFQDPDAESNHKNLFASAAQVGYETNFQRMVSWGGGGGDSESRVLLLLFVLGMSFLLLLGQCINLHSLMAGLCQMESQVFEFQHEFRVRRSIAWSQIGHPLPPPTLITEYTFSSNRIFSRLSW* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3280521 3283144 + Vvi12g203 Vvi12g203 772726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g203 307 MobiDBLite consensus disorder prediction 1 27 - -
Vvi12g203 307 PANTHER TRANSCRIPTION FACTOR TCP4 3 271 - -
Vvi12g203 307 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Vvi12g203 307 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 271 IPR005333 GO:0003700
Vvi12g203 307 Pfam TCP family transcription factor 22 93 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g460 Vvi12g203 ECH
Vvi12g203 Vvi19g139 ECH
Vvi10g184 Vvi12g203 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13785 PF03634 TCP 1.10E-30 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g203 - - vvi:100243659 461.455