Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g210 ATGGCGCAACTGCCTCCAAAGGTCCCAGCCATGGCTGCCAACTGGCCTAGTTTTCCTCACCAGAAGATCCCTTCCATGGGGAACTTGGCGCCTCCCGCCACGCAGAACCCCTCCTGGGTCGATGAATTCCTCGACTTCTCCTCCGCCAAGCGGGGCACTCACCGGAGATCCGTCAGCGACTCCATTGCCTTCTTCGAGGCCCCGGACGATTGCCGCAACTCGGGGGCGGCCCCCCGGCCGCCGGGGGCTGGCAATGAGTTTGATCAATTCGACGACGAGCAGTTCATGTCCATGTTCACCGACGCCATGGCCCCCACCATCTCCTCCTCCAACCCCTCCACGCCTTCCGACCATTACAGCTTTAATGAAGAGAAAACTACAACAATTGAGCAGCAACAGCAGCAGCAGCAGCTCAAGAACGAATCGGAGGAGGTGCAAAGCTCTTGCAAATTGGAGTCACAAACCCCACCACAACCTTCAATGACCACCTCCAATGATCGGATCGTAGACCCCAAAAGAGTGAAAAGAATTCTGGCAAACAGGCAATCCGCGCAAAGATCACGAGTTAGGAAGCTACAATACATATCAGAGCTGGAACGCAGCGTCACCTCATTACAAACCGAAGTCTCGGTGTTGTCGCCGCGGGTGGCGTTTCTGGACCATCAGCGGTTGCTTCTAAACGTCGACAACAGCGCTCTCAAGCAAAGAATCGCGGCTCTGGCTCAAGATAAGATTTTCAAAGATGCCCATCAAGATGCGTTGAAGAGGGAAATAGAGAGACTAAGGCAAGTCTATCACCAGCAGAACCTCAAGACTACGGAGAACGCGGCGCCACCCACGGCCTCCGATGTTAAGGATTTTAAGGAGGAGGATGTTCTAAACCATTGA 888 54.39 MAQLPPKVPAMAANWPSFPHQKIPSMGNLAPPATQNPSWVDEFLDFSSAKRGTHRRSVSDSIAFFEAPDDCRNSGAAPRPPGAGNEFDQFDDEQFMSMFTDAMAPTISSSNPSTPSDHYSFNEEKTTTIEQQQQQQQLKNESEEVQSSCKLESQTPPQPSMTTSNDRIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQDALKREIERLRQVYHQQNLKTTENAAPPTASDVKDFKEEDVLNH* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3365914 3367561 - Vvi12g210 Vvi12g210 772733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g210 295 PANTHER BASIC LEUCINE ZIPPER 34 1 283 - -
Vvi12g210 295 MobiDBLite consensus disorder prediction 68 89 - -
Vvi12g210 295 MobiDBLite consensus disorder prediction 104 169 - -
Vvi12g210 295 MobiDBLite consensus disorder prediction 269 295 - -
Vvi12g210 295 MobiDBLite consensus disorder prediction 104 167 - -
Vvi12g210 295 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 170 222 IPR004827 GO:0003700|GO:0006355
Vvi12g210 295 Coils Coil 251 271 - -
Vvi12g210 295 Gene3D - 171 270 - -
Vvi12g210 295 SMART brlzneu 168 232 IPR004827 GO:0003700|GO:0006355
Vvi12g210 295 Pfam bZIP transcription factor 172 216 IPR004827 GO:0003700|GO:0006355
Vvi12g210 295 SUPERFAMILY Leucine zipper domain 172 226 IPR046347 GO:0003700|GO:0006355
Vvi12g210 295 CDD bZIP_plant_RF2 173 223 IPR044759 GO:0003700|GO:0006355
Vvi12g210 295 PANTHER BASIC LEUCINE ZIPPER 61-LIKE 1 283 - -
Vvi12g210 295 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 175 190 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g210 Vvi19g147 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13786 PF00170 bZIP_1 5.20E-09 CL0018 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g210 - - vvi:100243740 562.762