Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g218 ATGTTCACCAATCTTCAATTTGCTAGGAAGGAGAGTCGAACCAGTGATGTTGCAGTGTTGGAGGAGCAAGTGCATCAGATGCTTCGCGAGTGGAAAGCTGAGCTCAATGAGCCGTCTCCAGCTTCTTCTTTGCTTGGTGGTAGTCTTGGGTCATTTTCAGCAGATATTAACCGTTTGTTGCAGCGCTGTGAGGAGGAAGATGATGCAACTAGTGCATTAGTAGAACCTGCAGCATTGAAGCCTGAGCCTGATGTTCAAAGTCTTCAGGCAGGCAATTCGATGGCCTTTCAAGAGGACTATCTCGTGAATCATGCATCACAAGACCATTGCCTTCTGGGGTTTGATCAATGCAAAGGCTCTGCATTTGGGTTGCAAAATACAGTGGCTAATAACTTGGAGATGACAACTCAGTCAGATTATAATCAGTTTGATATGCATCAAGACTTTGACCATGAGCTTTTTATTGGCCCCATGGGGCTGTGTGGACAGGATGGTGTGCCCAACATTCCTGGCTTGTTGCCAAACATCTGCCCTCCACCATCTGCTTTCTTAGGGCCAAAATGTGCTCTCTGGGATTGTCCCAGGCCTGCTCAAGGTTCTGAATGGTGTCAGGATTATTGCAGTAGCTTTCATGCGAGTCTAGCATTAAATGAAGGCCCCCCAGGTATGACTCCAGTTCTGCGACCTGGGGGCATTGGTTTGAAGGATGGTCCTCTATTTGCTGCACTTAGTGCAAAGACACAGGGAAAGGATGTTGGCATCCCTGAATGTGAGGGGGCTGCAACTTCGAAATCTCCATGGAATGCTCCTGAGTTGTTTGATCTTTCTGTTCTTGAAGGTGAAATAATTAGGGAGTGGCTCTTTTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGGAAGCAGAGGTCATTGCCAGATTACAGTGGACGTGGTTGGCATGAATCAAGGAAACAAGTGATGAAGGAATTTGGGGGATTGAAGAGGTCTTATTACATGGATCCGCAACCTCTAACCTGTTTTGAGTGGCATCTTTATGAATATGAGATCAACCACTGTGATGCTTGTGCATTATATAGGTTAGAACTCAAGCTCGTTGATGGAAAGAAGAGTCCCAAGGGAAAGGTGATAAATGATTCACTTGCTGATCTGCAGAAGCAGATGGGAAGGCTTACTGCTGAGTTTCCTACTGATGTCAAACGCTCTACCAAGGGCAGGACAAAGGTTAATAAAAAGGTTGGTGCCAGAAATATTTATTCTGCTCCTAATCTCATGACTCCTACAGCTGAAACTTTCAGTTATGGGCTAAGTGGATCATACAATTATCTTCCTGAGAATTTGGCTGACTATTATGTTTATCTTGTGCCTGTTCATGTGCAACTTGAGTTATTCCTGTGTGTTATGTTCTCTCTCAAAGATGACATATTTGGTGAAATATGA 1443 44.56 MFTNLQFARKESRTSDVAVLEEQVHQMLREWKAELNEPSPASSLLGGSLGSFSADINRLLQRCEEEDDATSALVEPAALKPEPDVQSLQAGNSMAFQEDYLVNHASQDHCLLGFDQCKGSAFGLQNTVANNLEMTTQSDYNQFDMHQDFDHELFIGPMGLCGQDGVPNIPGLLPNICPPPSAFLGPKCALWDCPRPAQGSEWCQDYCSSFHASLALNEGPPGMTPVLRPGGIGLKDGPLFAALSAKTQGKDVGIPECEGAATSKSPWNAPELFDLSVLEGEIIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFGGLKRSYYMDPQPLTCFEWHLYEYEINHCDACALYRLELKLVDGKKSPKGKVINDSLADLQKQMGRLTAEFPTDVKRSTKGRTKVNKKVGARNIYSAPNLMTPTAETFSYGLSGSYNYLPENLADYYVYLVPVHVQLELFLCVMFSLKDDIFGEI* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3462914 3470985 - Vvi12g218 Vvi12g218 772741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g218 480 PANTHER TRANSCRIPTION FACTOR VOZ1 1 453 IPR039277 GO:0006355|GO:0048578
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g218 - - - vvi:100262658 929.087
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g159 Vvi12g218 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g218 . . Bda06g00389 . . . . . . . Cma02g00196 Cma20g00581 . Car20g00557 . . . . . . . . . . . . . . . . . . Cone10ag1260 . . . . Chy11g00658 . . . . . . . . Bma12g00825 . Cmo02g00199 Cmo20g00652 . . . . Cpe16g00412 Cpe05g01419 Bhi10g01369 Tan05g0925 . . Hepe08g0429 . . . . . . . . . . . . Cme11g00861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi10g159 ECH 2 485 VOZ-9 Transcription Factor Family AT1G28520 70.7 1.1e-197 686.4
Vvi12g218 ECH 1 453 VOZ-9 Transcription Factor Family AT1G28520 65.6 5.5e-168 587.8
Vvi12g218 ECH 2 392 VOZ-9 Transcription Factor Family AT2G42400 55.8 3.8e-115 412.1
Vvi10g159 ECH 27 422 VOZ-9 Transcription Factor Family AT2G42400 51.1 2.3e-112 402.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004233 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13787 None None None None Vvi TF