Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g245 ATGTTGCAGAAGATGGCTGCAGAAGCAATTCCAAATGGTTTCATTCAAAATCCAATTGGTGGATCCAATCCTCCCACCATCAAGAAGAAGAGAAACCTTCCAGGAACCCCAGATCCTGAAGCCGAAGTCATAGCCTTGTCACCGAAGACACTCATGGCCACAAACAGATTCTTATGTGAGATATGTGGAAAAGGTTTTCAGAGGGATCAAAATCTGCAACTGCATCGGCGAGGACACAACCTTCCTTGGAAGCTCAAGCAAAGGAGCAGCAAGGAACCCAGGAAGCGTGTCTACGTCTGTCCCGAAAAGACCTGTGTCCACCACCACCCTTCGAGGGCTCTAGGAGACCTGACTGGGATAAAAAAGCACTTCTGTCGGAAGCACGGGGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGATACGCCGTGCAGTCAGACTGGAAAGCTCACACCAAAACTTGCGGCACTAGGGAATACAAATGTGACTGTGGCACTCTATTTTCAAGGCGAGATAGCTTCATCACTCATAGGGCCTTCTGTGATGCCCTAGCAGAAGAGACGGCTAGAGTTACTGCTGCCTCCAACATCAACAATGGCACTATCAATTATCATTTCATGGGGACTTCACTTGCACCAAGCATGCCACAACATTTCTCCTCTATCTTCAAGCCTATCTCAAGCAACGACGAAGCAACCGATCAAACAAGACGGGGACTCTCCCTGTGGATGGGCCAAGGATCTCAAGGCCATGAAACAATGGGGACGAATCTCCAAGAGATTCATCAACTCAGATCCTCAATGAGTCCAGGTTCGTCTTCAAATAACACGGAAGATCAACTAACAAGCAGTACTTCACTTCCATTAAGCAATGTTAAGGAAGCTGCAGGAAGTCAGATTGTGAGTGTCCCTTCCTTGTACAGCTCCCAACACCACTCCCATCAAACACCTCTAGGAAACATGTCTGCGACAGCCTTATTGCAGAAAGCTGCCCAAATGGGAGCAACTTCTGCTGATCCTTTCCTTGGGAGCTTTGGGTTGAAGTGTGACAGTAGTCTAGTTCAAGATGGAAACAAATTTTGTGGGTTGTATACTGCAAACCAACTTCCAACCAACGACATGGAGAATCCGAAGGATCTCTCCACTTTCAATCAGTTGCAAATGTACCCCGCAAAACGCCGCAACACCCAGAACGATGACAGCACTGGGGGCCAAACTAGAGATTTCTTAGGTGTTGGGGTGCAAACCATCTGCCACCCATCTTCAATCAATGGATGGATGTGA 1284 47.82 MLQKMAAEAIPNGFIQNPIGGSNPPTIKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHTKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVTAASNINNGTINYHFMGTSLAPSMPQHFSSIFKPISSNDEATDQTRRGLSLWMGQGSQGHETMGTNLQEIHQLRSSMSPGSSSNNTEDQLTSSTSLPLSNVKEAAGSQIVSVPSLYSSQHHSHQTPLGNMSATALLQKAAQMGATSADPFLGSFGLKCDSSLVQDGNKFCGLYTANQLPTNDMENPKDLSTFNQLQMYPAKRRNTQNDDSTGGQTRDFLGVGVQTICHPSSINGWM* 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3778165 3780152 + Vvi12g245 Vvi12g245 772768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g245 427 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 424 - -
Vvi12g245 427 Gene3D Classic Zinc Finger 53 80 - -
Vvi12g245 427 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Vvi12g245 427 MobiDBLite consensus disorder prediction 264 289 - -
Vvi12g245 427 PANTHER F-BOX ASSOCIATED PROTEIN 27 424 - -
Vvi12g245 427 Gene3D Classic Zinc Finger 90 181 - -
Vvi12g245 427 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vvi12g245 427 SMART c2h2final6 57 79 IPR013087 -
Vvi12g245 427 SMART c2h2final6 133 153 IPR013087 -
Vvi12g245 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13788 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g245 K25870 - vvi:100252370 870.152