Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g248 ATGTCTGTGATAGTTGGTTCTCGTGGTTACATCGCACCAGAATATGCCTACACTCTTCGAGTGAATGAAAAGAGCGACATTTACAGCTTTGGGGTGGTCATTCTAGAGCTGGTGACAGGTCGACTTCCAGTGGACCCAGAGTTTGGGGAGAAGGATTTGGTGAAATGGGTGTCTGCCTCCTTGGATCAGAAAGGAGGAGAGCATGTCATCGATCCCAGACTCGATTGCAGCTTCAATGAAGAAATTGTCAGGGTCCTAAATGTAGGTCTCCTCTGTACCAACGCACTTCCCATTAACCGCCCTCCAATGCGAAGAGTGGTAAAGATGCTGCAGGAGGCGGGTGCCAGGAACAAGCCCAAGACTACTGCAAAGAAGGATGGGAAGCTTTCTCCTTATTACCATGAAGATGCCTCTAACCACGTGTAG 426 49.06 MSVIVGSRGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPVDPEFGEKDLVKWVSASLDQKGGEHVIDPRLDCSFNEEIVRVLNVGLLCTNALPINRPPMRRVVKMLQEAGARNKPKTTAKKDGKLSPYYHEDASNHV* 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3804270 3807856 - Vvi12g248 Vvi12g248 772771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g248 141 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 1 133 - -
Vvi12g248 141 Pfam Protein kinase domain 2 51 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g248 141 ProSiteProfiles Protein kinase domain profile. 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g248 141 MobiDBLite consensus disorder prediction 118 141 - -
Vvi12g248 141 Gene3D Transferase(Phosphotransferase) domain 1 1 137 - -
Vvi12g248 141 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 133 - -
Vvi12g248 141 SUPERFAMILY Protein kinase-like (PK-like) 2 114 IPR011009 -
Vvi12g248 141 MobiDBLite consensus disorder prediction 112 141 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g145 Vvi12g248 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76110 PF00069 Pkinase 9.60E-08 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g248 - - vri:117926073 286.96