Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g250 ATGGAGGGTGGTGCGGAAGAGGAGAAGAAGAAGGCTCCAGAAGGAGAGAACAAGTCGAAGCGGAAGATGAAGACTGCTTCGCAGTTAGAGATTCTGGAGAAGACTTATGCTGTGGAGACGTATCCATCGGAGACCTTGAGAGCAGAGCTTTCTGCGAAATTAGGTCTTTCTGATCGGCAATTACAGATGTGGTTCTGTCACCGGAGGTTGAAAGATAGGAAGACACCTCCGGTGAAGAGACCACGAAAGGATTCTCCTGTGAAGGTGACATCTTCTGCAGCCGGAACTCCGGTTCGGGAAGAAATGGAAGTGGGCAATGAGCATCCCTCAGGGTCGGGTTCGGGGTCAAGCCCATTTGGTCATGTATTGGAGTCACGAAGAGTTGTCCCTCGGCCTGGAACTGCTGTTGCAAGGATTGGAGCTGATATGCCGCCAATGAAGAGGTACTATGAGCCACCTCAGCCCATATCAGAGCTTCGCGCCATAGCATTTGTGGAGGCACAGTTAGGGGAGCCATTGAGGGAGGATGGGCCAATTCTCGGAATGGAGTTTGATCCCTTGCCACCGGACGCATTTGGCGCTCCCATTGCGACAGTTGGGCAGCAGAAGCAAGGTGTGCGGCCTTATGAGACCAAACTTTACGAGCGACCTGACGCTAAACCAATCAAGGTTAGTCTATATTCTTTGGCCTTCTTTATAGTCAGTGATGAGGGATTTATGAATGAAAAGGAATATAAGATATTTGCACCCTGCAGTTTTGTAATATGCTTAGACATATTTATGATCTATGTTTCTTTCTTATGTGTTATTTTATTTTTCGATATGTTTCTCTTTAAAAGTCTATCTCCTTTCTTATGTTGCAATCCATTAAAGATATTTTGGGTATTATTGGACAAATATCCTTTACATGAATTATATATGAACTTTGAAGTTTTGCAACTAATTAGACATCTTCTATATCCTTTAGGCCATTATATCACGCAGTCACCTAGGTTATACCGGTCAACCCTTCCTATAGGCTTAGAAAATGAGACATGCGCTAGGTTACAACTGTTTCTTGAAATTTTCTCCCTTAATGAGAGAAATGTAATAGTGGATTTGGGAATGCTTTACCTGCAGGGTGCTGGAAGGGCTGTTCATGAATATCAATTTCTTCCGGAGCAGCCAAGTGTCAGAACTGACACATATGAAAGGGTTGGTTCTCACTACTATGGTTCACCTGCTGATGGTCCAAGTGCCAGGGCTTCATTGTCCACTGGACGCTCATTCATGCATGGGAATGAACAGGTAGCCTCTGGATATGGTTTTCAAGGGCAGATGCCAAACTTAAATCTTCTTTCCCAACAGGGTAGGCAGAACCATGGCTTGTCATCCACTTCGGGAGATTATGACACTGTTCCACGAAAGAATTCCCTTGGAAGCATTGGTATGGATGCTCATTTTGGTTCTCATCCAATTACTGCGCTGGACAATCCATTTATATCATCTGATCGGAGGGTTACCAATGATGAGGATGTTTTGCGGATGGAGAGGAAACGCAAGAGTGAAGAGGCAAGGATAGCAAAGGAAGTTGAAGCTCATGAAAAAAGAATTCGAAAAGAGCTTGAGAAACAAGATATTTTGAGGCGAAAGAGAGAAGAACAAATGAGGAAAGAAATGGAGAGGCATGACCGTGAAAGGCGGAAGGAAGAAGAAAGGCTTTTGCGTGAAAAGCAGAGAGAAGAGGAGAGATACCAGAGGGAACAAAGGCGTGAACTTGAACGGAGGGAGAAGTTTTTGCAAAAGGAATCTATCAGAGCTGAGAAAATGAGACAAAAAGAAGAACTCCGCAGGGAAAAGGAGGCTGCAAGGGTTAAAGCTGCTAATGACCGAGCTATTGCTCGAAGAATTGCTAAAGAATCAATGGAATTAATTGAGGATGAACGATTGGAACTCATGGAATTGGTGGCTTTAAGCAAGGGGTTGCCTTCAATACTGTCTCTTGACAGTGAAACTCTTCAAAATCTTGAGTCATTTAGGGATATGTTGACTGCATTCCCACCCAAGTCTGTGCAATTGAGAAGGCCTTTCACAATTCAACCCTGGACTGATTCTGAGGAGAATATAGGAAATCTTCTTATGGTTTGGAGATTTTTAATTACCTTTTCTGACGTTCTTGGGCTTTGGCCATTTACTATGGATGAGTTTGTTCAAGCTTTTCATGACTATGATCCAAGGTTGTTGGGCGAGATACATGTTGCTCTCCTGAGATCCATCATTAAGGATATTGAAGATGTTGCCCGAACACCCTCCATTGGGCTGGGCGCAAATCAAAATAGTGCTGCTAATCCTGGGGGTGGGCATCCTCAGATTGTTGAAGGGGCATATGCTTGGGGCTTTGATATTCGCAGCTGGCAGCGACACTTAAACCCATTGACATGGCCTGAAATATTGCGGCAGTTTGCCTTATCTGCAGGGTTCGGGCCAAAGCTGAAGAAAAGGAATGTGGAAGAGACATATCTCCGAGATGACAATGAGGGAAATGATTGTGAAGATATTATTACTAATTTGCGCAGTGGAGCAGCAGCAGAAAATGCTGTTGCGATAATGCAAGAAAGGGGTTTCTCTAATCCACGTAGATCTAGGCATCGCTTGACTCCTGGGACGGTCAAATTTGCAGCATTTCATGTTCTTTCTCTTGAGGGAAGCAAGGGCCTAACAATATTAGAAGTTGCTGACAAGATCCAGAAATCTGGACTTCGGGACCTTACAACAAGCAAGACACCAGAGGCATCTATTGCTGCTGCCCTGTCAAGGGATGGAAAGCTTTTTGAAAGGACTGCACCATCAACATATTGTGTACGCCCGGCATATAGGAAGGACCCCGCTGATGCTGATGCAATACTTTCTGCAGCCAGGGAAAAAATCCAGATCTTTAAAAGTGGGTGTTCCGATGGAGAAGAGGCTGATGATGTAGAAAGAGATGAAGATTCCGAAAGTGATGTAGTTGAGGATCCTGAGGTTGATGATTTAGGTGCTGATCCAAATTTGAAGAAAGAGGCTCAAAATTCTTATGAAGCAGATGGATTTCAAAGCAAGTCTGTCTCAGAAAATGAAAAGGAGACTCTCTTTGCTGAGGCTATGGAAACAAAAGGTGGCCTTGAGAATGCTGGTGAGGGTTTGTCTTCAACACATTCTGAGGGTTTCAAGGAGGTAATAAGTACTGGTGCTTCTGCTGATCAATCCATCGATGTTGCTGGCATAAGCAATAAGCCAACTAATCCTGATCAAGAAGACACTGATATTGATGAAAGTAACTCTGGGGAACCATGGGTTCAAGGACTTATGGAAGGCGAGTATTCTGATCTGAGTGTTGAGGAGCGCCTTAATGCCCTTGTAGCTTTAATTGGTGTGGCAATTGAAGGAAACTCAATTCGCATTGTTCTCGAGGAACGTTTGGAAGCGGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAGGCTCAACTTGATAAACGGCGCATGAAAGAAGAGTATGTCATGAAGATGCATTACCCGTCTTTTATGGGCAATAAGACTGAACAGAATGTTACAATGTCCACGACAGAGGGCAGGCAAAGTCCAATGGTAGCTGTTGATGAAAAAAATAATGAGCTGTCAATGAACCCTGTAGTCCATCCCGAACCTTTTAGTGATCCACAGAACGACCAAAGTTTTCTTAATAATTTGCCCCCTGAGAGGAACCTGCCAATGCAAGATTTCTCTGCTGGGCCAGAAAATATCCCACTTCAGCTACCTGGATATGCTGCAGAAAAGTCACGCTCACAGTTAAAATCTTATATTGGCCACAAGGCAGAAGAGATGTATGTATATAGGTCATTGCCTCTTGGTCAGGACCGTAGGCGAAATCGATATTGGCAGTTTATTACCTCTGCTTCTAGAAATGATCCTAACTCTGGCCGGATCTTCGTTGAGTTACGGAATGGTTGTTGGAGGCTTATTGACTCCGAGGAGGGGTTTGATGCTCTTGTGGCATCTTTGGACGCAAGAGGGGTTAGGGAAGCCCATTTGCAATCAATGCTGCAAAGGATTGAAATATCCTTCAAGGAAACAGTTAGGAGGAACTTGCAGCTTTCAAGCATTGGAAGGCAAAATAGCCCTAGTAGCACTGTGTGTGTTTCAAATTCTGATGCAACGGAGCCCTCAGCATCGTTTTCAATTGAGCTTGGAAGGAATGATGCTGAGAAATTTGATGCATTGAATAGATATCAAGATTTTGAGAAGTGGATGTGGAAAGAATGCATTAATCCTTCAACACTATGTGCCCTGAAGTATGGGAAGAAAAGCCCTTTGGACAGCAACTATTCTGAACATGTGGCTCAATGTGAAGAAAAGCACAAAGTAGACCTTGAATGGGGCTTTTCATCGAGTTCAGACTCTTCTCCCCTGAGGATCAAATTACTCAAAGCCCATTTAGCTCTAATTGAGGTCTCTGTTCTACCTGAAGCTCTTCAACCTGACTGGACAGACACCTACAGGAAGTCTTGGGGTATGAAGCTGCATGCCTCTTCATCAGCTGAAGACCTTATTCAGATTCTGACATTGTTGGAGAGTAACATAAGGAGGGACTACTTATCCTCAGACTTTGAGACCACCAATGAACTGTTGGGTTTGTCTAATGCATCAGGATGTGCTGTTGATGATTCTTTGGCAGCTGGATCAGTTCCTGTACTTCCATGGATACCACAAACAACAGCTGCTGTGGCAATAAGGCTCATTGAACTTGATGCATCCATTTCTTACATGCTTCATCAGAAGTTGGAATCTCACAAAGATAAAGGGGCTAATGACTTCATAAGAGTTCCGGCTAAATTTTCTGTTATGAAGAACATGCAAGATGATGAATCTGCAGAAGCTCCGATTGAAGCTGTACATCTTCGAGATGAGAATTGGGTTGAAATGGGAAGCGGGCATACCAGCTCAGGCCGTGGGCGAGGGGGTCGACGAGGTCGTGGTCGCACTCGTGGGGGGAGATCTCAGAGAAGGGTCATTGGTTCCAGATCTGAATCGAGCAAAAGAAGTAGTGCAGCAAACAATGAAAAACTAGGGCTACTGGGATGGAAAGGCCGAACACGGGGACGAGGAGGGCGTAGGAGGGGTCGGCGCACTGTCAGAAGTAGGCAGAAACCTGTGAAACAGGTGGTTGAAGACATCCCTGAAGAGATCATATTCAAGCCACCCCCAAGAAACTTGGATAGGGAGTGGAATGTAGAAACCCCCACGAGGGAGCCAGTGGAGGAAGCTGAAAATGTTAGCAGTTCGGAAAGTTCAGAGGAGTATGACGATGATAACGGTCAGGGAACAGGTGATGAATGTGATGATTTAGGCGTAGATGAGTATTCGGGGCCTTTTAATGGCAAGTCAGAAGATGTAATAGAGGAGAGTGATGAGATAGGAGATGGTGATGAAGATGAAGAGGAGGAGGGAGAGGAGGAGGAAGATGATGAGGGAGACGTAGATGTGGGAGGATATATAATTGGGGATTCGGATGAAGAGAGAAACGGTTATGAAGATGGAGGGCATACTGGGGTAGGAGATGAAGGTGGAGGATATGCATCTTCAGATTACAGTGAGTAG 5613 44.72 MEGGAEEEKKKAPEGENKSKRKMKTASQLEILEKTYAVETYPSETLRAELSAKLGLSDRQLQMWFCHRRLKDRKTPPVKRPRKDSPVKVTSSAAGTPVREEMEVGNEHPSGSGSGSSPFGHVLESRRVVPRPGTAVARIGADMPPMKRYYEPPQPISELRAIAFVEAQLGEPLREDGPILGMEFDPLPPDAFGAPIATVGQQKQGVRPYETKLYERPDAKPIKVSLYSLAFFIVSDEGFMNEKEYKIFAPCSFVICLDIFMIYVSFLCVILFFDMFLFKSLSPFLCCNPLKIFWVLLDKYPLHELYMNFEVLQLIRHLLYPLGHYITQSPRLYRSTLPIGLENETCARLQLFLEIFSLNERNVIVDLGMLYLQGAGRAVHEYQFLPEQPSVRTDTYERVGSHYYGSPADGPSARASLSTGRSFMHGNEQVASGYGFQGQMPNLNLLSQQGRQNHGLSSTSGDYDTVPRKNSLGSIGMDAHFGSHPITALDNPFISSDRRVTNDEDVLRMERKRKSEEARIAKEVEAHEKRIRKELEKQDILRRKREEQMRKEMERHDRERRKEEERLLREKQREEERYQREQRRELERREKFLQKESIRAEKMRQKEELRREKEAARVKAANDRAIARRIAKESMELIEDERLELMELVALSKGLPSILSLDSETLQNLESFRDMLTAFPPKSVQLRRPFTIQPWTDSEENIGNLLMVWRFLITFSDVLGLWPFTMDEFVQAFHDYDPRLLGEIHVALLRSIIKDIEDVARTPSIGLGANQNSAANPGGGHPQIVEGAYAWGFDIRSWQRHLNPLTWPEILRQFALSAGFGPKLKKRNVEETYLRDDNEGNDCEDIITNLRSGAAAENAVAIMQERGFSNPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTILEVADKIQKSGLRDLTTSKTPEASIAAALSRDGKLFERTAPSTYCVRPAYRKDPADADAILSAAREKIQIFKSGCSDGEEADDVERDEDSESDVVEDPEVDDLGADPNLKKEAQNSYEADGFQSKSVSENEKETLFAEAMETKGGLENAGEGLSSTHSEGFKEVISTGASADQSIDVAGISNKPTNPDQEDTDIDESNSGEPWVQGLMEGEYSDLSVEERLNALVALIGVAIEGNSIRIVLEERLEAANALKKQMWAEAQLDKRRMKEEYVMKMHYPSFMGNKTEQNVTMSTTEGRQSPMVAVDEKNNELSMNPVVHPEPFSDPQNDQSFLNNLPPERNLPMQDFSAGPENIPLQLPGYAAEKSRSQLKSYIGHKAEEMYVYRSLPLGQDRRRNRYWQFITSASRNDPNSGRIFVELRNGCWRLIDSEEGFDALVASLDARGVREAHLQSMLQRIEISFKETVRRNLQLSSIGRQNSPSSTVCVSNSDATEPSASFSIELGRNDAEKFDALNRYQDFEKWMWKECINPSTLCALKYGKKSPLDSNYSEHVAQCEEKHKVDLEWGFSSSSDSSPLRIKLLKAHLALIEVSVLPEALQPDWTDTYRKSWGMKLHASSSAEDLIQILTLLESNIRRDYLSSDFETTNELLGLSNASGCAVDDSLAAGSVPVLPWIPQTTAAVAIRLIELDASISYMLHQKLESHKDKGANDFIRVPAKFSVMKNMQDDESAEAPIEAVHLRDENWVEMGSGHTSSGRGRGGRRGRGRTRGGRSQRRVIGSRSESSKRSSAANNEKLGLLGWKGRTRGRGGRRRGRRTVRSRQKPVKQVVEDIPEEIIFKPPPRNLDREWNVETPTREPVEEAENVSSSESSEEYDDDNGQGTGDECDDLGVDEYSGPFNGKSEDVIEESDEIGDGDEDEEEEGEEEEDDEGDVDVGGYIIGDSDEERNGYEDGGHTGVGDEGGGYASSDYSE* 1871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3840175 3862721 + Vvi12g250 Vvi12g250 772773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g250 1870 MobiDBLite consensus disorder prediction 1805 1833 - -
Vvi12g250 1870 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1284 1356 IPR028941 -
Vvi12g250 1870 Pfam HB1, ASXL, restriction endonuclease HTH domain 881 948 IPR007759 GO:0006355
Vvi12g250 1870 MobiDBLite consensus disorder prediction 1640 1870 - -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 1764 1789 - -
Vvi12g250 1870 Coils Coil 524 544 - -
Vvi12g250 1870 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1870 IPR044977 GO:0006357
Vvi12g250 1870 MobiDBLite consensus disorder prediction 1721 1761 - -
Vvi12g250 1870 CDD homeodomain 18 75 IPR001356 GO:0003677
Vvi12g250 1870 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Vvi12g250 1870 MobiDBLite consensus disorder prediction 72 86 - -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 973 1010 - -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 1078 1103 - -
Vvi12g250 1870 SMART testlast3 699 758 IPR018501 -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 1 26 - -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 981 1003 - -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 1673 1690 - -
Vvi12g250 1870 SMART HOX_1 17 79 IPR001356 GO:0003677
Vvi12g250 1870 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1870 - -
Vvi12g250 1870 Gene3D - 3 76 - -
Vvi12g250 1870 ProSiteProfiles DDT domain profile. 699 758 IPR018501 -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 450 471 - -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 1703 1720 - -
Vvi12g250 1870 Pfam DDT domain 700 755 IPR018501 -
Vvi12g250 1870 Coils Coil 546 626 - -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 1838 1852 - -
Vvi12g250 1870 SUPERFAMILY Homeodomain-like 15 74 IPR009057 -
Vvi12g250 1870 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1099 1143 IPR028942 -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 450 467 - -
Vvi12g250 1870 ProSiteProfiles HARE-type HTH domain profile. 881 950 IPR007759 GO:0006355
Vvi12g250 1870 Pfam Homeodomain 18 74 IPR001356 GO:0003677
Vvi12g250 1870 MobiDBLite consensus disorder prediction 72 127 - -
Vvi12g250 1870 MobiDBLite consensus disorder prediction 1656 1672 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g141 Vvi12g250 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13790 PF15613 WSD 8.30E-14 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g250 - - vvi:100250601 2605.09