Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g269 ATGAAGCGCTATGTTTACATCAACGATGATGAATTATCTCAAGAACTTTACTGTGACAACCGAATATCGAACAGAAAATATACTTTATTGAATTTTCTCCCAAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAACCAGTACTTTTTGTTAATTGCTTGCCTTCAACTATGGCCTCTTATTACACCGGTAAATCCTGCCAGTACATGGGGTCCCCTTATTTTCATATTTGCAGTCTCTGCAACAAAAGAGGCATGGGATGATTACAATAGATATCTCTCTGATAAAAAGGCAAATGAGAAAGAAGTTTGGGTTGTAAGGCAGGGCATCAAGAAACATATTCAAGCACAGGATATTTGTGTTGGTAATGTAGTCTGGCTTCGTGAGAATGAAGAAGTGCCATGTGATCTTGTTTTAATTGGCACCTCTGATCCACAAGGTGTTTGCTATGTGGAGACAGCTGCCCTAGATGGTGAAACTGATCTTAAGACGAGGGTTATACCCTCTGCTTGCATGGGCATAGATTTTGAGCTATTGCACAAAATGAAGGGTGTTATTGAGTGTCCCATTCCAGATAAGGACATTAGAAGATTTGATGCAAATCTGCGTTTGTTCCCTCCGTTCATCGATAATGATTTTTGTCCTTTAACCATAAAAAACACAATTCTTCAGTCGTGCTACTTGCGGAATACAGAGTGGGTTTGTGGGGTTGCTGTTTATACAGGCAAGGACACCAGAGCGCTGCTCAATAACGGACGAGTGCTTTTTGGAGGAAGTTTCCAAGTATTCCTTCTTAAAGCCTTCGACTGTTTGCGCAATGAAACCAAGTTGGGTATGAGTCGGGGTATTCCTGAACCAAAACTAACAGCTGTAGATGCCATGATTGACAAGTTGACTGGAGCAATATTTGTTTTTCAAATAGTGGTTGTCATTGTTCTGGGCATAGCTGGGAATGTCTGGAAGGATACAGAAGCAGTAAAGCAATGGTATGTTCTATACCCAAAGAAAGGTCCATGGTATGAGCTATTGGTCATTCCTCTACGGTTTGAGCTTCTTTGTTCAATTATGATCCCCATATCTATAAAGGTATCTTTGGATCTTGTGAAGAGCTTATATGCAAAGTTTATTGATTGGGATAACCAGATGATTGACCAAGAAACAAGTACTCCATCCCATGCAACAAATACGGCAATAAGTGAGGACTTGGGGCAGGTTGAGTATATTTTGACTGATAAAACTGGAACTCTTACTGAGAATATAATGATCTTTAGAAGATGCTGTATTGGTGGCATTTTCTATGGAAATGAGAGTGGGGATGCTCTGAAAGATGTGGAGCTGCTGAATGCTGTTTCCAGTGGCTCTCCTGATGTTATTCAATTTCTTACAGTTATGGCATTATGTAATACAGTTATACCTGTGAAAAGCAAAACTGGAGCAATCTCATACAAGGCACAATCTCAAGATGAGGATGCTCTTGTTCAGGCTGCTGCTCGCTTGCACATGGTTTTTGTCAATAAGAATGCAAATACTCTTGAAATCAACTTCAACGCTTCAATAATTCAGTATGAAGTATTGGACACTCTGGAGTTCACTTCTGATAGGAAAAGGATGTCAGTTGTGGTGAAAGATTGCCAGAATGGAAAGATTTTCCTTTTGTCAAAAGGAGCAGATGAAGCCATTATACCTTATGCATGTGCTGGACAACAAACACGAACTTTTACTGAAGCTGTAGAACAATATTCTCAATTGGGACTACGCACGTTATGCTTGGCTTGGCGGGAGCTTAAAGAAGATGAATATCGAGATTGGTCTTTGATGTTTAAAGAGGCTAATAGCACATTGGTTGATAGGGAGTGGAGACTAGCTGAGGTCTGCCAAAGACTAGAACATGACCTTGAAATCCTTGGTGTTACAGCAATAGAGGATCGTCTACAGGATGGTGTACCAGAAACAATTGAGACACTTCGAAAAGCAGGAATCAACTTTTGGATGCTTACCGGAGACAAGCAGAATACTGCCATACAGATTGCTCTTTCCTGCAATTTTATTTCCCCTGAACCAAAAGGCCAGCTTTTGTTAATCAATGGCAAAACAGAAGATGAAGTTGGCAGAAGTTTAGACAGGGTCTTGCTTACAATGAGGATAACAACTTCAGAACCTAAGGATGTGGCATTTGTTATTGATGGATGGGCTCTTGAAATTGCGCTTAAGCATTATCGGAAAGCATTCACTGACTTAGCTATATTGTCAAGGACGGCTTTATGTTGTCGTGTGACACCATCTCAAAAAGCACAGCTTGTGGAGATCTTAAAATCATGCGATTATAGAACATTGGCTATTGGGGATGGTGGAAATGATGTGAGGATGATACAACAAGCTGACATTGGTGTCGGCATTAGTGGGAGAGAAGGATTGCAGGCAGCAAGGGCTGCTGATTATAGTATTGGGAAGTTCAGATTTCTGAAAAGACTAATACTTGTCCATGGACGGTACTCGTACAACCGTACAGCGTTTCTGTCCCAATATTCCTTTTATAAGTCGTTACTGATTTGTTTCATCCAGATCTTTTTCTCTTTTATTTCAGGTGTCTCTGGAACCAGCCTTTTCAATTCTGTCAGTTTGATGGCTTATAATGTTTTCTACACTAGTATACCTGTTCTAGTCAGTGTCCTTGACAAAGATCTTAGTGAAAAAACTGTGATGCAACACCCGCAAATTTTATTTTACTGCCAAGCAGGGAGGCTTCTTAATCCTAGCACATTTGCTGGATGGTTTGGGCGGTCTCTGTTTCATGCAATTGTTGTATTTGTAATCAGCATACATGCATACGCCTATGAGAAAAGTGAAATGGAGGAGGTATCAATGGTGGCACTCTCTGGGTGTATTTGGTTGCAGGCTTTTGTTGTAACAATAGAGACAAATTCCTTCACGGTTTTGCAACATCTTGCCATATGGGGAAATCTGGCTGCCTTCTATATCATCAACTGGATTTTGAGTGCTGTGCCGGCATCAGGGCTGTACACAATCATGTTCCGGCTGTGTAAACAACCATCTTACTGGATAACCATGTTTCTCATTGTGGTAACAGGAATGGGTCCAGTGCTGGCTATAAAGTACTTCCGCTATACATACAGACCAAGTAAAATCAACACACTTCAGCAGGCTGAACGGTTGGGTGGGCCAATCTTGTCACTGGGAAATATAGAGCCACAGCCAAGATCCATTGAAAAAGATGTTTCTCCATTGTCTATTACTCTACCCAAGAATCGGAATCCAGTATATGAACCTCTCCTATCAGACTCACCAAATTCTACAAGAAAGTCTTTCGGATCCGCAACCACTTTTGATTTCTTCCCATCACAGTCTCGGTTGTCTTCAAGCTACTCAAGAAACTGCAAGGACAACTGA 3408 40.93 MKRYVYINDDELSQELYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKEVWVVRQGIKKHIQAQDICVGNVVWLRENEEVPCDLVLIGTSDPQGVCYVETAALDGETDLKTRVIPSACMGIDFELLHKMKGVIECPIPDKDIRRFDANLRLFPPFIDNDFCPLTIKNTILQSCYLRNTEWVCGVAVYTGKDTRALLNNGRVLFGGSFQVFLLKAFDCLRNETKLGMSRGIPEPKLTAVDAMIDKLTGAIFVFQIVVVIVLGIAGNVWKDTEAVKQWYVLYPKKGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDNQMIDQETSTPSHATNTAISEDLGQVEYILTDKTGTLTENIMIFRRCCIGGIFYGNESGDALKDVELLNAVSSGSPDVIQFLTVMALCNTVIPVKSKTGAISYKAQSQDEDALVQAAARLHMVFVNKNANTLEINFNASIIQYEVLDTLEFTSDRKRMSVVVKDCQNGKIFLLSKGADEAIIPYACAGQQTRTFTEAVEQYSQLGLRTLCLAWRELKEDEYRDWSLMFKEANSTLVDREWRLAEVCQRLEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLLINGKTEDEVGRSLDRVLLTMRITTSEPKDVAFVIDGWALEIALKHYRKAFTDLAILSRTALCCRVTPSQKAQLVEILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEKTVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFVISIHAYAYEKSEMEEVSMVALSGCIWLQAFVVTIETNSFTVLQHLAIWGNLAAFYIINWILSAVPASGLYTIMFRLCKQPSYWITMFLIVVTGMGPVLAIKYFRYTYRPSKINTLQQAERLGGPILSLGNIEPQPRSIEKDVSPLSITLPKNRNPVYEPLLSDSPNSTRKSFGSATTFDFFPSQSRLSSSYSRNCKDN* 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4012377 4069587 + Vvi12g269 Vvi12g269 772792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g269 1135 SFLD C1.7: P-type atpase like 392 831 - -
Vvi12g269 1135 ProSitePatterns E1-E2 ATPases phosphorylation site. 411 417 IPR018303 -
Vvi12g269 1135 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 424 1135 - -
Vvi12g269 1135 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 10 360 - -
Vvi12g269 1135 Pfam Phospholipid-translocating P-type ATPase C-terminal 808 1047 IPR032630 -
Vvi12g269 1135 Gene3D - 75 249 - -
Vvi12g269 1135 SFLD p-type atpase 392 831 IPR044492 -
Vvi12g269 1135 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Vvi12g269 1135 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 273 1053 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vvi12g269 1135 Gene3D - 473 615 IPR023299 GO:0000166
Vvi12g269 1135 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 10 360 - -
Vvi12g269 1135 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 424 1135 - -
Vvi12g269 1135 SUPERFAMILY Calcium ATPase, transduction domain A 100 246 IPR008250 -
Vvi12g269 1135 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 416 603 IPR023299 GO:0000166
Vvi12g269 1135 Gene3D - 632 820 IPR023214 -
Vvi12g269 1135 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 747 864 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi12g269 1135 Pfam E1-E2 ATPase 99 162 - -
Vvi12g269 1135 SUPERFAMILY Calcium ATPase, transmembrane domain M 12 1046 IPR023298 -
Vvi12g269 1135 Pfam Cation transport ATPase (P-type) 466 562 - -
Vvi12g269 1135 SUPERFAMILY HAD-like 404 835 IPR036412 -
Vvi12g269 1135 PRINTS P-type cation-transporting ATPase superfamily signature 409 423 - -
Vvi12g269 1135 PRINTS P-type cation-transporting ATPase superfamily signature 658 668 - -
Vvi12g269 1135 PRINTS P-type cation-transporting ATPase superfamily signature 780 799 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g269 K01530 - vvi:100252404 2158.26