Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g276 ATGGGAGGAGTTTCTGCTGCAGTCTCCAAGTCAGCTGCTGCACCAATTGAGCGAGTTAAGCTCTTGATTCAGAATCAGGATGAGATGATTAAGGCTGGCAGGTTGTCTGAACCATACAAGGGAATTACTGACTGCTTTGCCAGAACTATTAAGGATGAAGGTGTCATTTCCCTTTGGAGAGGCAACACTGCTAATGTTATTAGATATTTCCCCACTCAGGCCCTGAACTTCGCTTTCAAGGATTACTTCAAGAGACTCTTCAACTTCAAGAAAGACAGGGATGGCTACTGGAAATGGTTTGCTGGGAACTTGGCATCAGGTGGTGCTGCTGGTGCTTCTTCTCTTCTATTTGTTTATTCCCTAGATTATGCCCGTACACGTTTGGCCAATGATGCTAAGGCTGCTAAAAAGGGTGGTGAAAGGCAATTTAATGGTTTGATTGATGTGTACAAGAAAACCATCAAATCTGATGGCATTGCGGGGCTTTATCGTGGATTCAACATCTCATGTGTTGGAATTATAGTGTACCGTGGGCTCTATTTTGGAATGTATGATTCACTGAAACCTGTGGTCCTGGTTGGTGAGATGCAGGATAGTTTCTTGGCTAGTTTCTTGCTGGGATGGGGAATCACAATTGGCGCCGGTGCAAACATCCTGCGTGCTGTTGCAGGTGCTGGTGTGCTTGCTGGTTATGATAAGTTGCAGCTCCTTGTACTTGGCAAGAAATATGGATCCGGTGGTGGCGGCTAA 750 45.6 MGGVSAAVSKSAAAPIERVKLLIQNQDEMIKAGRLSEPYKGITDCFARTIKDEGVISLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTIKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGEMQDSFLASFLLGWGITIGAGANILRAVAGAGVLAGYDKLQLLVLGKKYGSGGGG* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4173531 4177079 + Vvi12g276 Vvi12g276 772799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g276 249 Gene3D Mitochondrial carrier domain 1 244 IPR023395 -
Vvi12g276 249 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 1 215 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi12g276 249 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 213 248 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi12g276 249 ProSiteProfiles Solute carrier (Solcar) repeat profile. 98 190 IPR018108 -
Vvi12g276 249 PRINTS Mitochondrial carrier protein signature 11 25 IPR002067 GO:0055085
Vvi12g276 249 PRINTS Mitochondrial carrier protein signature 61 81 IPR002067 GO:0055085
Vvi12g276 249 PRINTS Mitochondrial carrier protein signature 113 131 IPR002067 GO:0055085
Vvi12g276 249 PRINTS Mitochondrial carrier protein signature 163 181 IPR002067 GO:0055085
Vvi12g276 249 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-RELATED 1 215 - -
Vvi12g276 249 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-RELATED 213 248 - -
Vvi12g276 249 PRINTS Adenine nucleotide translocator signature 39 60 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi12g276 249 PRINTS Adenine nucleotide translocator signature 72 84 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi12g276 249 PRINTS Adenine nucleotide translocator signature 98 111 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi12g276 249 PRINTS Adenine nucleotide translocator signature 203 219 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi12g276 249 SUPERFAMILY Mitochondrial carrier 2 216 IPR023395 -
Vvi12g276 249 Pfam Mitochondrial carrier protein 1 90 IPR018108 -
Vvi12g276 249 Pfam Mitochondrial carrier protein 97 190 IPR018108 -
Vvi12g276 249 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 86 IPR018108 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g276 K05863 - vvi:100262663 421.779