Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g277 ATGGCTTCATCTTCTTCTTCCATGGCAACCCATTTCTTAATCCTCCTGCTCCTACAATTTTCTTTCTTATTCAACAATCTGGCTGCAAAACATGGCAGCCCTGCTACCCGTCATCACCGTGCCCACAACCGCCCTCACAACCACTCCCCCACATCAAACCCCAGACTTCAACAAGCTTACATTGCCCTCCAAGCATGGAAGCGCGTAATCTACTCTGACCCCAACAAATTCACCTCCAACTGGGTTGGTCCCTCGGTCTGCAGCTACAAGGGTGTGTACTGCACAACAGCTCTAGATGACCCCAAAATCAAAGTTGTCGCTGGTATTGACCTCAATCTTGCGAACATAGCCGGCTCCCTCCCTGATGAGCTCGGTCTCCTGACCGACCTGGCCCTGCTCCATCTAAACTCCAACCGCTTCTGTGGAATCATCCCAGAAACCTTTGCCAACCTCACTCTCCTATTTGAGCTTGATATCAGCAACAACAGATTTGTTGGCCCCTTCCCTTCAGTTGTGGTCTCTCTTCCTACCCTGAAATTTCTCGACATTCGCTTCAATGAATTCGAGGGGGCATTGCCTCCTGATGTTTTCAACAGAGGCCTTGATGCAATCTTTGTTAATAACAACCTCTTCAGTTCAGTAATACCATCAACTTTCGGCACGAGCTCGGCTTCTGTAGTGGTATTTGCCAACAACAAATTTGGAGGTTGCCTGCCTCCAAGTATTGCAAATTTTGCAGATACCTTAGAGGAGCTTTTATTGTTCAACACCAGCTTGTCAGGTTGTTTGCCACAGGAAATCGGTTTCCTATACAAACTGAGGGTGCTGGATGTGAGCTTCAACAAGGTAGTAGGCACCATACCCTACAGCCTTGCAGGATTAGCTCACTTGGAGCAACTGGTCTTAGGCCACAACATGATGACTGGGAACATACCTGAGGGGATTTGCATTCTCCCAAATTTGATGAACTTCACATTCTCTTACAACTTCTTCTGCGAGGAGGAGGGCATTTGCCAGAACCTGACATCAAATGGGATCAAGTATGACGATCGGAGAAACTGTTTGCCGGATAAACCACTTCAGAGGAGCAAGAAGCAATGTGAGGCTGTATACAAACACCCTGTTGACTGCCTTGAGCACCACTGCAGTGGAGGTGGTGGTGGTACAGGAGCTGCTGTTGCTCCAATGCATGCAGCATCATCTCTGGCTTCACCTCCCACCCATTCCTAG 1230 48.46 MASSSSSMATHFLILLLLQFSFLFNNLAAKHGSPATRHHRAHNRPHNHSPTSNPRLQQAYIALQAWKRVIYSDPNKFTSNWVGPSVCSYKGVYCTTALDDPKIKVVAGIDLNLANIAGSLPDELGLLTDLALLHLNSNRFCGIIPETFANLTLLFELDISNNRFVGPFPSVVVSLPTLKFLDIRFNEFEGALPPDVFNRGLDAIFVNNNLFSSVIPSTFGTSSASVVVFANNKFGGCLPPSIANFADTLEELLLFNTSLSGCLPQEIGFLYKLRVLDVSFNKVVGTIPYSLAGLAHLEQLVLGHNMMTGNIPEGICILPNLMNFTFSYNFFCEEEGICQNLTSNGIKYDDRRNCLPDKPLQRSKKQCEAVYKHPVDCLEHHCSGGGGGTGAAVAPMHAASSLASPPTHS* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4178064 4179294 + Vvi12g277 Vvi12g277 772800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g277 409 PANTHER EXTENSIN-LIKE PROTEIN 1 404 - -
Vvi12g277 409 Pfam Leucine rich repeat 130 187 IPR001611 GO:0005515
Vvi12g277 409 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 404 - -
Vvi12g277 409 Gene3D Ribonuclease Inhibitor 58 352 IPR032675 -
Vvi12g277 409 SUPERFAMILY L domain-like 58 341 - -
Vvi12g277 409 Pfam Leucine rich repeat N-terminal domain 60 94 IPR013210 -
Vvi12g277 409 MobiDBLite consensus disorder prediction 34 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g277 - - - vvi:104880817 787.719
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g277 . . . . . . . . . . . . . . Sed05g1943 . . Bhi05g01965 Tan02g0208 Cmetu01g0388 Lac12g0736 Hepe02g0129 . . . . . . . . . . . . Cone12ag1471 . . . Cme01g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01698 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi9g802 . 5 327 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 9.2e-48 189.1
Vvi12g277 . 53 383 Leucine-rich Repeat extension Gene Families AT1G62440 52.0 5.4e-40 163.3
Vvi12g277 . 53 382 Leucine-rich Repeat extension Gene Families AT4G13340 57.1 3.3e-42 170.6
Vvi3g498 . 22 222 Leucine-rich Repeat extension Gene Families AT4G13340 67.7 2.4e-40 164.5
Vvi12g277 . 53 382 Leucine-rich Repeat extension Gene Families AT3G24480 54.1 1.3e-42 171.4
Vvi3g498 . 22 156 Leucine-rich Repeat extension Gene Families AT3G24480 59.6 1.7e-39 161.0
Vvi12g277 . 50 383 Leucine-rich Repeat extension Gene Families AT3G22800 62.1 2.0e-53 207.2
Vvi12g277 . 53 385 Leucine-rich Repeat extension Gene Families AT5G25550 54.7 1.3e-38 157.9
Vvi3g498 . 41 408 Leucine-rich Repeat extension Gene Families AT5G25550 52.2 1.1e-37 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28