Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g277 ATGGCTTCATCTTCTTCTTCCATGGCAACCCATTTCTTAATCCTCCTGCTCCTACAATTTTCTTTCTTATTCAACAATCTGGCTGCAAAACATGGCAGCCCTGCTACCCGTCATCACCGTGCCCACAACCGCCCTCACAACCACTCCCCCACATCAAACCCCAGACTTCAACAAGCTTACATTGCCCTCCAAGCATGGAAGCGCGTAATCTACTCTGACCCCAACAAATTCACCTCCAACTGGGTTGGTCCCTCGGTCTGCAGCTACAAGGGTGTGTACTGCACAACAGCTCTAGATGACCCCAAAATCAAAGTTGTCGCTGGTATTGACCTCAATCTTGCGAACATAGCCGGCTCCCTCCCTGATGAGCTCGGTCTCCTGACCGACCTGGCCCTGCTCCATCTAAACTCCAACCGCTTCTGTGGAATCATCCCAGAAACCTTTGCCAACCTCACTCTCCTATTTGAGCTTGATATCAGCAACAACAGATTTGTTGGCCCCTTCCCTTCAGTTGTGGTCTCTCTTCCTACCCTGAAATTTCTCGACATTCGCTTCAATGAATTCGAGGGGGCATTGCCTCCTGATGTTTTCAACAGAGGCCTTGATGCAATCTTTGTTAATAACAACCTCTTCAGTTCAGTAATACCATCAACTTTCGGCACGAGCTCGGCTTCTGTAGTGGTATTTGCCAACAACAAATTTGGAGGTTGCCTGCCTCCAAGTATTGCAAATTTTGCAGATACCTTAGAGGAGCTTTTATTGTTCAACACCAGCTTGTCAGGTTGTTTGCCACAGGAAATCGGTTTCCTATACAAACTGAGGGTGCTGGATGTGAGCTTCAACAAGGTAGTAGGCACCATACCCTACAGCCTTGCAGGATTAGCTCACTTGGAGCAACTGGTCTTAGGCCACAACATGATGACTGGGAACATACCTGAGGGGATTTGCATTCTCCCAAATTTGATGAACTTCACATTCTCTTACAACTTCTTCTGCGAGGAGGAGGGCATTTGCCAGAACCTGACATCAAATGGGATCAAGTATGACGATCGGAGAAACTGTTTGCCGGATAAACCACTTCAGAGGAGCAAGAAGCAATGTGAGGCTGTATACAAACACCCTGTTGACTGCCTTGAGCACCACTGCAGTGGAGGTGGTGGTGGTACAGGAGCTGCTGTTGCTCCAATGCATGCAGCATCATCTCTGGCTTCACCTCCCACCCATTCCTAG 1230 48.46 MASSSSSMATHFLILLLLQFSFLFNNLAAKHGSPATRHHRAHNRPHNHSPTSNPRLQQAYIALQAWKRVIYSDPNKFTSNWVGPSVCSYKGVYCTTALDDPKIKVVAGIDLNLANIAGSLPDELGLLTDLALLHLNSNRFCGIIPETFANLTLLFELDISNNRFVGPFPSVVVSLPTLKFLDIRFNEFEGALPPDVFNRGLDAIFVNNNLFSSVIPSTFGTSSASVVVFANNKFGGCLPPSIANFADTLEELLLFNTSLSGCLPQEIGFLYKLRVLDVSFNKVVGTIPYSLAGLAHLEQLVLGHNMMTGNIPEGICILPNLMNFTFSYNFFCEEEGICQNLTSNGIKYDDRRNCLPDKPLQRSKKQCEAVYKHPVDCLEHHCSGGGGGTGAAVAPMHAASSLASPPTHS* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4178064 4179294 + Vvi12g277 Vvi12g277 772800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g277 409 PANTHER EXTENSIN-LIKE PROTEIN 1 404 - -
Vvi12g277 409 Pfam Leucine rich repeat 130 187 IPR001611 GO:0005515
Vvi12g277 409 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 404 - -
Vvi12g277 409 Gene3D Ribonuclease Inhibitor 58 352 IPR032675 -
Vvi12g277 409 SUPERFAMILY L domain-like 58 341 - -
Vvi12g277 409 Pfam Leucine rich repeat N-terminal domain 60 94 IPR013210 -
Vvi12g277 409 MobiDBLite consensus disorder prediction 34 53 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g277 - - vvi:104880817 787.719